Guide to the Human Genome
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Name: MSR1 Sequence: fasta or formatted (388aa) NCBI GI: 20357515
Description:

macrophage scavenger receptor 1 isoform type 3

Referenced in:

Macrophages and Monocytes
Additional Membrane Functions

Other entries for this name:
alt prot [451aa] macrophage scavenger receptor 1 isoform type 1
alt prot [358aa] macrophage scavenger receptor 1 isoform type 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         17           2
 C cysteine            1.5          6           1
 D aspartate           4.4         17           1
 E glutamate           9.0         35           3
 F phenylalanine       3.9         15           1
 G glycine             9.0         35           1
 H histidine           2.3          9           1
 I isoleucine          6.2         24           1
 K lysine              5.9         23           1
 L leucine             9.8         38           2
 M methionine          2.8         11           1
 N asparagine          6.4         25           2
 P proline             5.2         20           2
 Q glutamine           5.7         22           2
 R arginine            3.9         15           1
 S serine              8.2         32           2
 T threonine           5.7         22           2
 V valine              3.6         14           1
 W tryptophan          1.3          5           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   macrophage scavenger receptor 1 isoform type 3 [Homo... 
MSR1                  0.917   macrophage scavenger receptor 1 isoform type 1 [Homo...
MSR1                  0.874   macrophage scavenger receptor 1 isoform type 2 
SCARA5                0.153   scavenger receptor class A, member 5 
COLEC12               0.110   collectin sub-family member 12 
SCARA3                0.088   scavenger receptor class A, member 3 isoform 1 [Homo...
COL7A1                0.084   alpha 1 type VII collagen precursor 
COL19A1               0.080   alpha 1 type XIX collagen precursor 
COL1A1                0.080   alpha 1 type I collagen preproprotein 
COL11A2               0.080   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.080   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.080   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A1               0.077   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.077   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.077   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A2                0.076   alpha 2 type V collagen preproprotein 
COL2A1                0.076   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.076   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A1                0.076   alpha 1 type V collagen preproprotein 
COL25A1               0.075   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.075   collagen, type XXV, alpha 1 isoform 2 
COL9A2                0.075   alpha 2 type IX collagen 
COL23A1               0.075   collagen, type XXIII, alpha 1 
COL4A5                0.075   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.075   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.075   type IV collagen alpha 5 isoform 3 precursor 
MARCO                 0.073   macrophage receptor with collagenous structure 
COL9A3                0.073   alpha 3 type IX collagen 
COL20A1               0.073   collagen, type XX, alpha 1 
COL3A1                0.072   collagen type III alpha 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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