Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SCARA5 Sequence: fasta or formatted (495aa) NCBI GI: 47271477
Description:

scavenger receptor class A, member 5

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         36           1
 C cysteine            2.4         12           2
 D aspartate           7.3         36           2
 E glutamate           5.9         29           2
 F phenylalanine       1.8          9           1
 G glycine            11.7         58           2
 H histidine           2.4         12           1
 I isoleucine          2.4         12           1
 K lysine              4.2         21           2
 L leucine            13.5         67           3
 M methionine          2.0         10           2
 N asparagine          2.8         14           1
 P proline             3.6         18           2
 Q glutamine           4.8         24           2
 R arginine            8.5         42           2
 S serine              6.1         30           2
 T threonine           4.0         20           1
 V valine              6.5         32           2
 W tryptophan          1.4          7           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scavenger receptor class A, member 5 
MSR1                  0.240   macrophage scavenger receptor 1 isoform type 1 [Homo...
MARCO                 0.159   macrophage receptor with collagenous structure 
MSR1                  0.120   macrophage scavenger receptor 1 isoform type 3 [Homo...
MSR1                  0.114   macrophage scavenger receptor 1 isoform type 2 
PRSS12                0.103   neurotrypsin precursor 
LOC284297             0.097   hypothetical protein LOC284297 
CD163                 0.096   CD163 antigen isoform b 
CD163                 0.096   CD163 antigen isoform a 
COLEC12               0.094   collectin sub-family member 12 
LOC100291777          0.091   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.091   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.091   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.091   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.091   deleted in malignant brain tumors 1 isoform a precu...
CD163L1               0.091   scavenger receptor cysteine-rich type 1 precursor [H...
LOC651581             0.089   PREDICTED: hypothetical protein 
LOXL4                 0.083   lysyl oxidase-like 4 precursor 
SRCRB4D               0.082   scavenger receptor cysteine rich domain containing, ...
LGALS3BP              0.080   galectin 3 binding protein 
LOXL2                 0.078   lysyl oxidase-like 2 precursor 
CD5L                  0.077   CD5 molecule-like 
LOXL3                 0.077   lysyl oxidase-like 3 precursor 
HHIPL1                0.071   HHIP-like protein 1 isoform a 
COLQ                  0.066   acetylcholinesterase collagen-like tail subunit iso...
COLQ                  0.066   acetylcholinesterase collagen-like tail subunit isof...
COLQ                  0.066   acetylcholinesterase collagen-like tail subunit isof...
COL22A1               0.065   collagen, type XXII, alpha 1 
COL3A1                0.064   collagen type III alpha 1 preproprotein 
COL16A1               0.064   alpha 1 type XVI collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press