COL25A1 27096

Name: COL25A1	Sequence: fasta or formatted (654aa)		NCBI GI: 38570075
Description: collagen, type XXV, alpha 1 isoform 1		Referenced in: Collagen
Other entries for this name: alt prot [642aa] collagen, type XXV, alpha 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 33 2 C cysteine 1.1 7 1 D aspartate 4.3 28 1 E glutamate 6.9 45 1 F phenylalanine 0.8 5 1 G glycine 25.5 167 3 H histidine 1.5 10 1 I isoleucine 3.1 20 2 K lysine 7.6 50 2 L leucine 6.3 41 2 M methionine 2.6 17 1 N asparagine 1.4 9 1 P proline 16.5 108 2 Q glutamine 4.9 32 2 R arginine 4.3 28 2 S serine 3.1 20 2 T threonine 2.4 16 2 V valine 2.0 13 2 W tryptophan 0.2 1 1 Y tyrosine 0.6 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XXV, alpha 1 isoform 1 COL25A1 0.936 collagen, type XXV, alpha 1 isoform 2 COL13A1 0.325 alpha 1 type XIII collagen isoform 15 COL13A1 0.323 alpha 1 type XIII collagen isoform 18 COL13A1 0.322 alpha 1 type XIII collagen isoform 14 COL13A1 0.322 alpha 1 type XIII collagen isoform 10 COL13A1 0.321 alpha 1 type XIII collagen isoform 11 COL13A1 0.320 alpha 1 type XIII collagen isoform 5 COL13A1 0.319 alpha 1 type XIII collagen isoform 4 COL13A1 0.316 alpha 1 type XIII collagen isoform 17 COL13A1 0.316 alpha 1 type XIII collagen isoform 16 COL13A1 0.314 alpha 1 type XIII collagen isoform 13 COL13A1 0.312 alpha 1 type XIII collagen isoform 6 COL13A1 0.311 alpha 1 type XIII collagen isoform 9 COL13A1 0.310 alpha 1 type XIII collagen isoform 8 COL5A1 0.309 alpha 1 type V collagen preproprotein COL13A1 0.308 alpha 1 type XIII collagen isoform 1 COL13A1 0.305 alpha 1 type XIII collagen isoform 12 COL13A1 0.305 alpha 1 type XIII collagen isoform 7 COL23A1 0.303 collagen, type XXIII, alpha 1 COL13A1 0.302 alpha 1 type XIII collagen isoform 2 COL1A1 0.293 alpha 1 type I collagen preproprotein COL13A1 0.293 alpha 1 type XIII collagen isoform 19 COL11A2 0.292 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.292 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.292 collagen, type XI, alpha 2 isoform 1 preproprotein ... LOC100293055 0.291 PREDICTED: similar to COL22A1 protein COL11A1 0.290 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.290 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.290 alpha 1 type XI collagen isoform A preproprotein [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.