Guide to the Human Genome
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Name: COL25A1 Sequence: fasta or formatted (654aa) NCBI GI: 38570075
Description:

collagen, type XXV, alpha 1 isoform 1

Referenced in:

Collagen

Other entries for this name:
alt prot [642aa] collagen, type XXV, alpha 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         33           2
 C cysteine            1.1          7           1
 D aspartate           4.3         28           1
 E glutamate           6.9         45           1
 F phenylalanine       0.8          5           1
 G glycine            25.5        167           3
 H histidine           1.5         10           1
 I isoleucine          3.1         20           2
 K lysine              7.6         50           2
 L leucine             6.3         41           2
 M methionine          2.6         17           1
 N asparagine          1.4          9           1
 P proline            16.5        108           2
 Q glutamine           4.9         32           2
 R arginine            4.3         28           2
 S serine              3.1         20           2
 T threonine           2.4         16           2
 V valine              2.0         13           2
 W tryptophan          0.2          1           1
 Y tyrosine            0.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.936   collagen, type XXV, alpha 1 isoform 2 
COL13A1               0.325   alpha 1 type XIII collagen isoform 15 
COL13A1               0.323   alpha 1 type XIII collagen isoform 18 
COL13A1               0.322   alpha 1 type XIII collagen isoform 14 
COL13A1               0.322   alpha 1 type XIII collagen isoform 10 
COL13A1               0.321   alpha 1 type XIII collagen isoform 11 
COL13A1               0.320   alpha 1 type XIII collagen isoform 5 
COL13A1               0.319   alpha 1 type XIII collagen isoform 4 
COL13A1               0.316   alpha 1 type XIII collagen isoform 17 
COL13A1               0.316   alpha 1 type XIII collagen isoform 16 
COL13A1               0.314   alpha 1 type XIII collagen isoform 13 
COL13A1               0.312   alpha 1 type XIII collagen isoform 6 
COL13A1               0.311   alpha 1 type XIII collagen isoform 9 
COL13A1               0.310   alpha 1 type XIII collagen isoform 8 
COL5A1                0.309   alpha 1 type V collagen preproprotein 
COL13A1               0.308   alpha 1 type XIII collagen isoform 1 
COL13A1               0.305   alpha 1 type XIII collagen isoform 12 
COL13A1               0.305   alpha 1 type XIII collagen isoform 7 
COL23A1               0.303   collagen, type XXIII, alpha 1 
COL13A1               0.302   alpha 1 type XIII collagen isoform 2 
COL1A1                0.293   alpha 1 type I collagen preproprotein 
COL13A1               0.293   alpha 1 type XIII collagen isoform 19 
COL11A2               0.292   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.292   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.292   collagen, type XI, alpha 2 isoform 1 preproprotein ...
LOC100293055          0.291   PREDICTED: similar to COL22A1 protein 
COL11A1               0.290   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.290   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.290   alpha 1 type XI collagen isoform A preproprotein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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