COL25A1 27095

Name: COL25A1	Sequence: fasta or formatted (642aa)		NCBI GI: 38570073
Description: collagen, type XXV, alpha 1 isoform 2		Referenced in: Collagen
Other entries for this name: alt prot [654aa] collagen, type XXV, alpha 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 33 2 C cysteine 1.1 7 1 D aspartate 4.0 26 1 E glutamate 6.7 43 1 F phenylalanine 0.8 5 1 G glycine 24.5 157 3 H histidine 1.7 11 1 I isoleucine 3.4 22 2 K lysine 7.3 47 2 L leucine 7.0 45 4 M methionine 2.5 16 1 N asparagine 1.4 9 1 P proline 16.2 104 2 Q glutamine 4.7 30 2 R arginine 4.2 27 2 S serine 3.9 25 2 T threonine 2.6 17 2 V valine 2.2 14 2 W tryptophan 0.0 0 0 Y tyrosine 0.6 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XXV, alpha 1 isoform 2 COL25A1 0.961 collagen, type XXV, alpha 1 isoform 1 COL13A1 0.303 alpha 1 type XIII collagen isoform 15 COL13A1 0.303 alpha 1 type XIII collagen isoform 18 COL5A1 0.302 alpha 1 type V collagen preproprotein COL13A1 0.300 alpha 1 type XIII collagen isoform 14 COL13A1 0.300 alpha 1 type XIII collagen isoform 10 COL13A1 0.299 alpha 1 type XIII collagen isoform 5 COL13A1 0.299 alpha 1 type XIII collagen isoform 20 COL13A1 0.299 alpha 1 type XIII collagen isoform 11 COL13A1 0.298 alpha 1 type XIII collagen isoform 4 COL13A1 0.297 alpha 1 type XIII collagen isoform 3 COL13A1 0.295 alpha 1 type XIII collagen isoform 17 COL13A1 0.294 alpha 1 type XIII collagen isoform 16 COL13A1 0.291 alpha 1 type XIII collagen isoform 13 COL13A1 0.291 alpha 1 type XIII collagen isoform 6 COL13A1 0.290 alpha 1 type XIII collagen isoform 9 COL1A1 0.290 alpha 1 type I collagen preproprotein COL13A1 0.288 alpha 1 type XIII collagen isoform 8 COL4A1 0.288 alpha 1 type IV collagen preproprotein COL13A1 0.288 alpha 1 type XIII collagen isoform 1 COL11A1 0.286 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.286 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.286 alpha 1 type XI collagen isoform A preproprotein [Ho... COL3A1 0.286 collagen type III alpha 1 preproprotein COL2A1 0.285 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.285 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL13A1 0.283 alpha 1 type XIII collagen isoform 7 COL13A1 0.283 alpha 1 type XIII collagen isoform 12 COL11A2 0.283 collagen, type XI, alpha 2 isoform 2 preproprotein ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.