Guide to the Human Genome
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Name: COL4A5 Sequence: fasta or formatted (1688aa) NCBI GI: 15890088
Description:

type IV collagen alpha 5 isoform 3 precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [1691aa] type IV collagen alpha 5 isoform 2 precursor
alt prot [1685aa] type IV collagen alpha 5 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8         47           3
 C cysteine            1.2         20           1
 D aspartate           3.2         54           2
 E glutamate           3.6         61           2
 F phenylalanine       2.5         42           1
 G glycine            28.4        479           4
 H histidine           0.8         13           1
 I isoleucine          4.1         69           3
 K lysine              4.7         80           1
 L leucine             6.6        112           2
 M methionine          1.5         26           2
 N asparagine          1.9         32           2
 P proline            23.2        391           2
 Q glutamine           4.4         74           1
 R arginine            2.2         37           2
 S serine              3.8         64           2
 T threonine           2.3         38           2
 V valine              1.8         31           2
 W tryptophan          0.3          5           1
 Y tyrosine            0.8         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   type IV collagen alpha 5 isoform 3 precursor 
COL4A5                0.999   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.997   type IV collagen alpha 5 isoform 1 precursor 
COL4A1                0.566   alpha 1 type IV collagen preproprotein 
COL4A3                0.480   alpha 3 type IV collagen isoform 1 precursor 
COL4A3                0.444   alpha 3 type IV collagen isoform 2 precursor 
COL4A6                0.412   type IV alpha 6 collagen isoform B precursor 
COL4A6                0.411   type IV alpha 6 collagen isoform A precursor 
COL4A3                0.401   alpha 3 type IV collagen isoform 4 precursor 
COL4A2                0.390   alpha 2 type IV collagen preproprotein 
COL4A3                0.379   alpha 3 type IV collagen isoform 5 precursor 
COL4A4                0.339   alpha 4 type IV collagen precursor 
COL7A1                0.298   alpha 1 type VII collagen precursor 
COL22A1               0.243   collagen, type XXII, alpha 1 
COL5A1                0.242   alpha 1 type V collagen preproprotein 
COL3A1                0.238   collagen type III alpha 1 preproprotein 
COL2A1                0.236   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.235   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A2               0.233   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.233   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A2               0.233   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL5A3                0.231   collagen, type V, alpha 3 preproprotein 
COL11A1               0.231   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.231   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.231   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL1A1                0.228   alpha 1 type I collagen preproprotein 
COL5A2                0.224   alpha 2 type V collagen preproprotein 
COL16A1               0.218   alpha 1 type XVI collagen precursor 
COL1A2                0.218   alpha 2 type I collagen 
COL27A1               0.213   collagen, type XXVII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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