COL4A5 6477

Name: COL4A5	Sequence: fasta or formatted (1688aa)		NCBI GI: 15890088
Description: type IV collagen alpha 5 isoform 3 precursor		Referenced in: Collagen
Other entries for this name: alt prot [1691aa] type IV collagen alpha 5 isoform 2 precursor alt prot [1685aa] type IV collagen alpha 5 isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.8 47 3 C cysteine 1.2 20 1 D aspartate 3.2 54 2 E glutamate 3.6 61 2 F phenylalanine 2.5 42 1 G glycine 28.4 479 4 H histidine 0.8 13 1 I isoleucine 4.1 69 3 K lysine 4.7 80 1 L leucine 6.6 112 2 M methionine 1.5 26 2 N asparagine 1.9 32 2 P proline 23.2 391 2 Q glutamine 4.4 74 1 R arginine 2.2 37 2 S serine 3.8 64 2 T threonine 2.3 38 2 V valine 1.8 31 2 W tryptophan 0.3 5 1 Y tyrosine 0.8 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.999 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.997 type IV collagen alpha 5 isoform 1 precursor COL4A1 0.566 alpha 1 type IV collagen preproprotein COL4A3 0.480 alpha 3 type IV collagen isoform 1 precursor COL4A3 0.444 alpha 3 type IV collagen isoform 2 precursor COL4A6 0.412 type IV alpha 6 collagen isoform B precursor COL4A6 0.411 type IV alpha 6 collagen isoform A precursor COL4A3 0.401 alpha 3 type IV collagen isoform 4 precursor COL4A2 0.390 alpha 2 type IV collagen preproprotein COL4A3 0.379 alpha 3 type IV collagen isoform 5 precursor COL4A4 0.339 alpha 4 type IV collagen precursor COL7A1 0.298 alpha 1 type VII collagen precursor COL22A1 0.243 collagen, type XXII, alpha 1 COL5A1 0.242 alpha 1 type V collagen preproprotein COL3A1 0.238 collagen type III alpha 1 preproprotein COL2A1 0.236 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.235 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A2 0.233 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.233 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A2 0.233 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL5A3 0.231 collagen, type V, alpha 3 preproprotein COL11A1 0.231 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.231 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.231 alpha 1 type XI collagen isoform A preproprotein [Ho... COL1A1 0.228 alpha 1 type I collagen preproprotein COL5A2 0.224 alpha 2 type V collagen preproprotein COL16A1 0.218 alpha 1 type XVI collagen precursor COL1A2 0.218 alpha 2 type I collagen COL27A1 0.213 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.