COL5A1 37103

Name: COL5A1	Sequence: fasta or formatted (1838aa)		NCBI GI: 89276751
Description: alpha 1 type V collagen preproprotein		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 92 2 C cysteine 0.7 12 1 D aspartate 5.7 105 2 E glutamate 6.5 120 2 F phenylalanine 2.1 39 1 G glycine 23.3 429 4 H histidine 0.9 17 1 I isoleucine 2.8 52 2 K lysine 5.3 98 3 L leucine 5.3 98 6 M methionine 1.3 23 1 N asparagine 1.8 34 2 P proline 18.2 334 3 Q glutamine 4.0 74 2 R arginine 3.8 70 2 S serine 3.8 70 2 T threonine 3.8 70 2 V valine 2.9 54 2 W tryptophan 0.4 7 1 Y tyrosine 2.2 40 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type V collagen preproprotein COL11A1 0.732 alpha 1 type XI collagen isoform A preproprotein [Ho... COL11A1 0.730 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.715 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A2 0.619 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A2 0.573 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.572 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL5A3 0.529 collagen, type V, alpha 3 preproprotein COL2A1 0.317 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.317 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL1A1 0.297 alpha 1 type I collagen preproprotein COL5A2 0.294 alpha 2 type V collagen preproprotein COL3A1 0.284 collagen type III alpha 1 preproprotein COL1A2 0.270 alpha 2 type I collagen COL27A1 0.251 collagen, type XXVII, alpha 1 COL4A5 0.249 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.246 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.243 type IV collagen alpha 5 isoform 1 precursor COL7A1 0.237 alpha 1 type VII collagen precursor COL4A1 0.233 alpha 1 type IV collagen preproprotein COL24A1 0.232 collagen, type XXIV, alpha 1 COL4A3 0.227 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.227 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.227 alpha 3 type IV collagen isoform 1 precursor COL4A3 0.226 alpha 3 type IV collagen isoform 5 precursor COL4A4 0.224 alpha 4 type IV collagen precursor COL22A1 0.220 collagen, type XXII, alpha 1 COL4A6 0.208 type IV alpha 6 collagen isoform A precursor COL4A6 0.208 type IV alpha 6 collagen isoform B precursor COL4A2 0.207 alpha 2 type IV collagen preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.