Guide to the Human Genome
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Name: COLEC12 Sequence: fasta or formatted (742aa) NCBI GI: 18641360
Description:

collectin sub-family member 12

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         32           2
 C cysteine            1.3         10           1
 D aspartate           6.1         45           2
 E glutamate           6.5         48           4
 F phenylalanine       2.8         21           1
 G glycine            10.0         74           2
 H histidine           1.5         11           2
 I isoleucine          4.3         32           2
 K lysine              6.9         51           2
 L leucine             9.4         70           2
 M methionine          1.8         13           1
 N asparagine          7.0         52           2
 P proline             6.9         51           2
 Q glutamine           7.1         53           2
 R arginine            3.8         28           1
 S serine              6.1         45           2
 T threonine           7.0         52           2
 V valine              4.3         32           2
 W tryptophan          1.3         10           1
 Y tyrosine            1.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   collectin sub-family member 12 
SCARA3                0.217   scavenger receptor class A, member 3 isoform 1 [Homo...
SCARA3                0.114   scavenger receptor class A, member 3 isoform 2 [Homo...
SFTPD                 0.103   pulmonary surfactant-associated protein D precursor ...
COL16A1               0.100   alpha 1 type XVI collagen precursor 
COL5A1                0.098   alpha 1 type V collagen preproprotein 
COL3A1                0.097   collagen type III alpha 1 preproprotein 
COL11A1               0.096   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.096   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.096   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL22A1               0.095   collagen, type XXII, alpha 1 
COL2A1                0.095   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.095   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL4A3                0.094   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.094   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.094   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.094   alpha 3 type IV collagen isoform 1 precursor 
COL1A1                0.094   alpha 1 type I collagen preproprotein 
COL5A2                0.094   alpha 2 type V collagen preproprotein 
COL5A3                0.093   collagen, type V, alpha 3 preproprotein 
COL7A1                0.091   alpha 1 type VII collagen precursor 
COL10A1               0.091   type X collagen alpha 1 precursor 
COL23A1               0.091   collagen, type XXIII, alpha 1 
COL11A2               0.091   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.091   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.091   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL1A2                0.091   alpha 2 type I collagen 
COL27A1               0.091   collagen, type XXVII, alpha 1 
COL4A5                0.090   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.090   type IV collagen alpha 5 isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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