Guide to the Human Genome
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Name: COL9A2 Sequence: fasta or formatted (689aa) NCBI GI: 11386161
Description:

alpha 2 type IX collagen

Referenced in:

Collagen

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         42           3
 C cysteine            0.6          4           1
 D aspartate           3.5         24           1
 E glutamate           4.5         31           2
 F phenylalanine       0.6          4           1
 G glycine            29.5        203           2
 H histidine           1.2          8           1
 I isoleucine          3.3         23           1
 K lysine              5.5         38           1
 L leucine             4.1         28           2
 M methionine          1.6         11           2
 N asparagine          0.9          6           1
 P proline            20.0        138           2
 Q glutamine           4.9         34           2
 R arginine            3.9         27           1
 S serine              2.6         18           1
 T threonine           2.2         15           1
 V valine              4.2         29           3
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 2 type IX collagen 
COL9A1                0.512   alpha 1 type IX collagen isoform 2 precursor 
COL9A1                0.507   alpha 1 type IX collagen isoform 1 precursor 
COL9A3                0.441   alpha 3 type IX collagen 
LOC100293055          0.373   PREDICTED: similar to COL22A1 protein 
COL22A1               0.371   collagen, type XXII, alpha 1 
COL5A1                0.361   alpha 1 type V collagen preproprotein 
COL4A5                0.356   type IV collagen alpha 5 isoform 2 precursor 
COL5A2                0.356   alpha 2 type V collagen preproprotein 
COL4A5                0.354   type IV collagen alpha 5 isoform 3 precursor 
COL1A1                0.354   alpha 1 type I collagen preproprotein 
COL4A5                0.352   type IV collagen alpha 5 isoform 1 precursor 
COL3A1                0.350   collagen type III alpha 1 preproprotein 
COL5A3                0.350   collagen, type V, alpha 3 preproprotein 
COL11A1               0.350   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.350   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.350   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL2A1                0.348   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.348   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL27A1               0.341   collagen, type XXVII, alpha 1 
COL4A1                0.339   alpha 1 type IV collagen preproprotein 
COL1A2                0.335   alpha 2 type I collagen 
COL11A2               0.334   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.334   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.334   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL16A1               0.330   alpha 1 type XVI collagen precursor 
COL4A4                0.328   alpha 4 type IV collagen precursor 
COL7A1                0.327   alpha 1 type VII collagen precursor 
COL24A1               0.324   collagen, type XXIV, alpha 1 
COL4A3                0.322   alpha 3 type IV collagen isoform 5 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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