COL20A1 989

Name: COL20A1	Sequence: fasta or formatted (1284aa)		NCBI GI: 112734845
Description: collagen, type XX, alpha 1		Referenced in: Collagen Fibronectin Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.9 114 3 C cysteine 1.0 13 2 D aspartate 3.6 46 2 E glutamate 5.7 73 4 F phenylalanine 2.7 35 2 G glycine 11.5 148 3 H histidine 2.2 28 1 I isoleucine 1.8 23 1 K lysine 3.0 38 2 L leucine 10.7 137 2 M methionine 1.1 14 1 N asparagine 0.9 11 1 P proline 10.0 128 3 Q glutamine 4.4 57 2 R arginine 6.6 85 2 S serine 8.3 107 3 T threonine 6.7 86 2 V valine 7.6 98 3 W tryptophan 1.3 17 1 Y tyrosine 2.0 26 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XX, alpha 1 COL14A1 0.169 collagen, type XIV, alpha 1 COL12A1 0.156 collagen, type XII, alpha 1 short isoform precursor ... COL12A1 0.156 collagen, type XII, alpha 1 long isoform precursor [... COL7A1 0.094 alpha 1 type VII collagen precursor COL9A1 0.071 alpha 1 type IX collagen isoform 1 precursor COL21A1 0.061 collagen, type XXI, alpha 1 precursor COL19A1 0.061 alpha 1 type XIX collagen precursor COL22A1 0.056 collagen, type XXII, alpha 1 FN1 0.052 fibronectin 1 isoform 5 preproprotein FN1 0.052 fibronectin 1 isoform 6 preproprotein FN1 0.051 fibronectin 1 isoform 3 preproprotein FN1 0.051 fibronectin 1 isoform 4 preproprotein FN1 0.049 fibronectin 1 isoform 1 preproprotein FN1 0.049 fibronectin 1 isoform 2 preproprotein COL1A2 0.046 alpha 2 type I collagen COL5A1 0.046 alpha 1 type V collagen preproprotein COL1A1 0.046 alpha 1 type I collagen preproprotein COL27A1 0.046 collagen, type XXVII, alpha 1 COL9A3 0.046 alpha 3 type IX collagen COL4A3 0.046 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.046 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.046 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.046 alpha 3 type IV collagen isoform 1 precursor COL11A1 0.045 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.045 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.045 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A2 0.045 alpha 2 type V collagen preproprotein COL2A1 0.045 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.045 collagen, type II, alpha 1 isoform 2 precursor [Hom... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.