COL23A1 25042

Name: COL23A1	Sequence: fasta or formatted (540aa)		NCBI GI: 29725624
Description: collagen, type XXIII, alpha 1		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 43 3 C cysteine 1.1 6 1 D aspartate 5.4 29 2 E glutamate 6.7 36 3 F phenylalanine 0.4 2 1 G glycine 27.2 147 6 H histidine 0.6 3 1 I isoleucine 1.5 8 1 K lysine 6.5 35 2 L leucine 7.4 40 3 M methionine 0.9 5 1 N asparagine 0.4 2 1 P proline 17.2 93 2 Q glutamine 3.1 17 1 R arginine 5.6 30 2 S serine 3.1 17 1 T threonine 1.5 8 2 V valine 2.8 15 2 W tryptophan 0.4 2 1 Y tyrosine 0.4 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XXIII, alpha 1 COL25A1 0.423 collagen, type XXV, alpha 1 isoform 1 COL13A1 0.375 alpha 1 type XIII collagen isoform 18 COL13A1 0.375 alpha 1 type XIII collagen isoform 14 COL25A1 0.373 collagen, type XXV, alpha 1 isoform 2 COL13A1 0.371 alpha 1 type XIII collagen isoform 10 COL13A1 0.369 alpha 1 type XIII collagen isoform 15 COL13A1 0.367 alpha 1 type XIII collagen isoform 11 COL13A1 0.364 alpha 1 type XIII collagen isoform 5 COL13A1 0.363 alpha 1 type XIII collagen isoform 4 COL13A1 0.363 alpha 1 type XIII collagen isoform 17 COL13A1 0.361 alpha 1 type XIII collagen isoform 16 COL13A1 0.356 alpha 1 type XIII collagen isoform 9 COL13A1 0.356 alpha 1 type XIII collagen isoform 3 COL13A1 0.340 alpha 1 type XIII collagen isoform 20 COL13A1 0.337 alpha 1 type XIII collagen isoform 13 COL13A1 0.335 alpha 1 type XIII collagen isoform 8 COL13A1 0.334 alpha 1 type XIII collagen isoform 6 COL13A1 0.333 alpha 1 type XIII collagen isoform 2 COL13A1 0.332 alpha 1 type XIII collagen isoform 1 COL13A1 0.326 alpha 1 type XIII collagen isoform 19 COL13A1 0.326 alpha 1 type XIII collagen isoform 12 COL13A1 0.322 alpha 1 type XIII collagen isoform 7 COL5A1 0.308 alpha 1 type V collagen preproprotein COL1A1 0.306 alpha 1 type I collagen preproprotein COL11A2 0.304 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.304 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.304 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL3A1 0.303 collagen type III alpha 1 preproprotein COL4A5 0.297 type IV collagen alpha 5 isoform 2 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.