COL1A1 640

Name: COL1A1	Sequence: fasta or formatted (1464aa)		NCBI GI: 110349772
Description: alpha 1 type I collagen preproprotein		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.6 140 2 C cysteine 1.2 18 2 D aspartate 4.5 66 2 E glutamate 5.1 75 2 F phenylalanine 1.8 27 1 G glycine 26.7 391 2 H histidine 0.6 9 1 I isoleucine 1.6 24 2 K lysine 3.9 57 2 L leucine 3.3 48 5 M methionine 0.9 13 1 N asparagine 1.9 28 1 P proline 19.0 278 2 Q glutamine 3.3 49 2 R arginine 4.8 71 1 S serine 4.1 60 1 T threonine 3.0 44 2 V valine 3.2 47 2 W tryptophan 0.4 6 1 Y tyrosine 0.9 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type I collagen preproprotein COL2A1 0.715 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.686 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL3A1 0.589 collagen type III alpha 1 preproprotein COL1A2 0.577 alpha 2 type I collagen COL5A2 0.574 alpha 2 type V collagen preproprotein COL11A1 0.368 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.368 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.368 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A1 0.358 alpha 1 type V collagen preproprotein COL11A2 0.354 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.354 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.354 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL5A3 0.352 collagen, type V, alpha 3 preproprotein COL27A1 0.298 collagen, type XXVII, alpha 1 COL7A1 0.292 alpha 1 type VII collagen precursor COL4A5 0.291 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.290 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.288 type IV collagen alpha 5 isoform 3 precursor COL4A1 0.283 alpha 1 type IV collagen preproprotein COL4A4 0.277 alpha 4 type IV collagen precursor COL4A3 0.275 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.273 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.273 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.273 alpha 3 type IV collagen isoform 1 precursor COL24A1 0.267 collagen, type XXIV, alpha 1 COL4A2 0.266 alpha 2 type IV collagen preproprotein COL22A1 0.265 collagen, type XXII, alpha 1 COL4A6 0.257 type IV alpha 6 collagen isoform A precursor COL4A6 0.257 type IV alpha 6 collagen isoform B precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.