COL7A1 28465

Name: COL7A1	Sequence: fasta or formatted (2944aa)		NCBI GI: 4502961
Description: alpha 1 type VII collagen precursor		Referenced in: Collagen Fibronectin Family Gene Structure
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 193 2 C cysteine 0.6 17 1 D aspartate 4.9 145 2 E glutamate 6.4 187 4 F phenylalanine 1.3 39 4 G glycine 21.3 627 2 H histidine 1.0 28 1 I isoleucine 1.9 56 2 K lysine 3.2 93 2 L leucine 7.2 212 2 M methionine 0.6 18 1 N asparagine 0.9 27 2 P proline 14.5 426 2 Q glutamine 3.6 105 3 R arginine 7.4 217 3 S serine 5.6 166 4 T threonine 4.5 132 2 V valine 6.8 201 3 W tryptophan 0.6 19 1 Y tyrosine 1.2 36 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type VII collagen precursor COL4A5 0.178 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.178 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.169 type IV collagen alpha 5 isoform 3 precursor COL4A1 0.168 alpha 1 type IV collagen preproprotein COL4A4 0.154 alpha 4 type IV collagen precursor COL4A3 0.151 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.151 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.151 alpha 3 type IV collagen isoform 1 precursor COL3A1 0.150 collagen type III alpha 1 preproprotein COL4A3 0.148 alpha 3 type IV collagen isoform 5 precursor COL2A1 0.146 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL4A2 0.145 alpha 2 type IV collagen preproprotein COL2A1 0.145 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL4A6 0.144 type IV alpha 6 collagen isoform A precursor COL4A6 0.144 type IV alpha 6 collagen isoform B precursor COL11A1 0.143 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.143 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.143 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A3 0.142 collagen, type V, alpha 3 preproprotein COL5A1 0.141 alpha 1 type V collagen preproprotein COL1A1 0.140 alpha 1 type I collagen preproprotein COL11A2 0.139 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.139 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.139 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL5A2 0.138 alpha 2 type V collagen preproprotein COL1A2 0.135 alpha 2 type I collagen COL22A1 0.127 collagen, type XXII, alpha 1 COL16A1 0.125 alpha 1 type XVI collagen precursor COL27A1 0.121 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.