Guide to the Human Genome
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Name: COL3A1 Sequence: fasta or formatted (1466aa) NCBI GI: 4502951
Description:

collagen type III alpha 1 preproprotein

Referenced in:

Collagen

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        115           3
 C cysteine            1.5         22           2
 D aspartate           3.8         55           2
 E glutamate           5.0         74           1
 F phenylalanine       1.6         23           1
 G glycine            28.2        413           2
 H histidine           1.0         14           1
 I isoleucine          2.5         36           2
 K lysine              4.2         62           2
 L leucine             3.3         48           3
 M methionine          1.2         17           2
 N asparagine          2.8         41           1
 P proline            19.2        281           2
 Q glutamine           2.9         43           2
 R arginine            4.1         60           1
 S serine              5.0         73           2
 T threonine           2.1         31           1
 V valine              2.5         36           1
 W tryptophan          0.5          7           2
 Y tyrosine            1.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   collagen type III alpha 1 preproprotein 
COL2A1                0.589   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL1A1                0.583   alpha 1 type I collagen preproprotein 
COL2A1                0.563   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A2                0.511   alpha 2 type V collagen preproprotein 
COL1A2                0.480   alpha 2 type I collagen 
COL11A1               0.357   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.357   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.357   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL11A2               0.339   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A2               0.331   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.331   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL27A1               0.301   collagen, type XXVII, alpha 1 
COL4A5                0.299   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.298   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.297   type IV collagen alpha 5 isoform 3 precursor 
COL7A1                0.294   alpha 1 type VII collagen precursor 
COL24A1               0.288   collagen, type XXIV, alpha 1 
COL4A1                0.288   alpha 1 type IV collagen preproprotein 
COL4A3                0.287   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.287   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.287   alpha 3 type IV collagen isoform 1 precursor 
COL4A3                0.286   alpha 3 type IV collagen isoform 5 precursor 
COL4A4                0.285   alpha 4 type IV collagen precursor 
COL5A3                0.274   collagen, type V, alpha 3 preproprotein 
COL4A2                0.272   alpha 2 type IV collagen preproprotein 
COL4A6                0.267   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.267   type IV alpha 6 collagen isoform B precursor 
COL22A1               0.266   collagen, type XXII, alpha 1 
COL5A1                0.259   alpha 1 type V collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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