COL3A1 28463

Name: COL3A1	Sequence: fasta or formatted (1466aa)		NCBI GI: 4502951
Description: collagen type III alpha 1 preproprotein		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.8 115 3 C cysteine 1.5 22 2 D aspartate 3.8 55 2 E glutamate 5.0 74 1 F phenylalanine 1.6 23 1 G glycine 28.2 413 2 H histidine 1.0 14 1 I isoleucine 2.5 36 2 K lysine 4.2 62 2 L leucine 3.3 48 3 M methionine 1.2 17 2 N asparagine 2.8 41 1 P proline 19.2 281 2 Q glutamine 2.9 43 2 R arginine 4.1 60 1 S serine 5.0 73 2 T threonine 2.1 31 1 V valine 2.5 36 1 W tryptophan 0.5 7 2 Y tyrosine 1.0 15 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen type III alpha 1 preproprotein COL2A1 0.589 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL1A1 0.583 alpha 1 type I collagen preproprotein COL2A1 0.563 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A2 0.511 alpha 2 type V collagen preproprotein COL1A2 0.480 alpha 2 type I collagen COL11A1 0.357 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.357 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.357 alpha 1 type XI collagen isoform A preproprotein [Ho... COL11A2 0.339 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A2 0.331 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.331 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL27A1 0.301 collagen, type XXVII, alpha 1 COL4A5 0.299 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.298 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.297 type IV collagen alpha 5 isoform 3 precursor COL7A1 0.294 alpha 1 type VII collagen precursor COL24A1 0.288 collagen, type XXIV, alpha 1 COL4A1 0.288 alpha 1 type IV collagen preproprotein COL4A3 0.287 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.287 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.287 alpha 3 type IV collagen isoform 1 precursor COL4A3 0.286 alpha 3 type IV collagen isoform 5 precursor COL4A4 0.285 alpha 4 type IV collagen precursor COL5A3 0.274 collagen, type V, alpha 3 preproprotein COL4A2 0.272 alpha 2 type IV collagen preproprotein COL4A6 0.267 type IV alpha 6 collagen isoform A precursor COL4A6 0.267 type IV alpha 6 collagen isoform B precursor COL22A1 0.266 collagen, type XXII, alpha 1 COL5A1 0.259 alpha 1 type V collagen preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.