COL2A1 840

Name: COL2A1	Sequence: fasta or formatted (1487aa)		NCBI GI: 111118976
Description: collagen, type II, alpha 1 isoform 1 precursor		Referenced in: Collagen
Other entries for this name: alt prot [1418aa] collagen, type II, alpha 1 isoform 2 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.0 134 2 C cysteine 1.3 19 2 D aspartate 4.2 62 2 E glutamate 5.3 79 2 F phenylalanine 1.7 25 1 G glycine 27.3 406 2 H histidine 0.5 8 1 I isoleucine 2.3 34 2 K lysine 4.5 67 2 L leucine 3.8 56 2 M methionine 1.1 16 1 N asparagine 2.2 32 2 P proline 18.2 270 2 Q glutamine 4.0 60 1 R arginine 4.8 72 1 S serine 3.2 48 2 T threonine 3.0 44 1 V valine 2.6 38 1 W tryptophan 0.5 7 2 Y tyrosine 0.7 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.935 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL1A1 0.705 alpha 1 type I collagen preproprotein COL5A2 0.638 alpha 2 type V collagen preproprotein COL3A1 0.587 collagen type III alpha 1 preproprotein COL1A2 0.568 alpha 2 type I collagen COL5A1 0.392 alpha 1 type V collagen preproprotein COL11A1 0.376 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.376 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.376 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A3 0.357 collagen, type V, alpha 3 preproprotein COL11A2 0.355 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A2 0.355 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.355 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL24A1 0.305 collagen, type XXIV, alpha 1 COL27A1 0.298 collagen, type XXVII, alpha 1 COL4A5 0.295 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.293 type IV collagen alpha 5 isoform 1 precursor COL7A1 0.292 alpha 1 type VII collagen precursor COL4A5 0.292 type IV collagen alpha 5 isoform 2 precursor COL4A1 0.285 alpha 1 type IV collagen preproprotein COL4A4 0.282 alpha 4 type IV collagen precursor COL4A3 0.274 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.274 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.274 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.274 alpha 3 type IV collagen isoform 1 precursor COL22A1 0.273 collagen, type XXII, alpha 1 COL4A2 0.266 alpha 2 type IV collagen preproprotein COL4A6 0.261 type IV alpha 6 collagen isoform A precursor COL4A6 0.261 type IV alpha 6 collagen isoform B precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.