Guide to the Human Genome
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Name: MARCO Sequence: fasta or formatted (520aa) NCBI GI: 5803080
Description:

macrophage receptor with collagenous structure

Referenced in:

Collagen
Macrophages and Monocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         41           2
 C cysteine            1.2          6           1
 D aspartate           3.7         19           2
 E glutamate           5.4         28           2
 F phenylalanine       1.9         10           1
 G glycine            21.0        109           2
 H histidine           1.9         10           2
 I isoleucine          2.1         11           1
 K lysine              6.3         33           2
 L leucine             7.3         38           2
 M methionine          1.9         10           1
 N asparagine          2.5         13           1
 P proline             8.5         44           2
 Q glutamine           6.5         34           2
 R arginine            4.0         21           2
 S serine              6.3         33           2
 T threonine           3.5         18           1
 V valine              5.8         30           3
 W tryptophan          1.2          6           1
 Y tyrosine            1.2          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   macrophage receptor with collagenous structure 
COL3A1                0.233   collagen type III alpha 1 preproprotein 
COL5A3                0.225   collagen, type V, alpha 3 preproprotein 
COL1A1                0.224   alpha 1 type I collagen preproprotein 
COL22A1               0.223   collagen, type XXII, alpha 1 
COL7A1                0.221   alpha 1 type VII collagen precursor 
COL5A2                0.219   alpha 2 type V collagen preproprotein 
COL2A1                0.218   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.218   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A1                0.217   alpha 1 type V collagen preproprotein 
COL11A1               0.215   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.215   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.215   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL4A5                0.215   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.215   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.215   type IV collagen alpha 5 isoform 3 precursor 
COL27A1               0.215   collagen, type XXVII, alpha 1 
COL9A1                0.214   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.214   alpha 1 type IX collagen isoform 2 precursor 
COL25A1               0.213   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.213   collagen, type XXV, alpha 1 isoform 2 
COL8A2                0.213   collagen, type VIII, alpha 2 
COL16A1               0.212   alpha 1 type XVI collagen precursor 
LOC100293055          0.212   PREDICTED: similar to COL22A1 protein 
COL9A2                0.212   alpha 2 type IX collagen 
COL24A1               0.211   collagen, type XXIV, alpha 1 
COL1A2                0.210   alpha 2 type I collagen 
COL13A1               0.209   alpha 1 type XIII collagen isoform 12 
COL4A1                0.209   alpha 1 type IV collagen preproprotein 
COL11A2               0.208   collagen, type XI, alpha 2 isoform 2 preproprotein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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