COL2A1 839

Name: COL2A1	Sequence: fasta or formatted (1418aa)		NCBI GI: 111118974
Description: collagen, type II, alpha 1 isoform 2 precursor		Referenced in: Collagen
Other entries for this name: alt prot [1487aa] collagen, type II, alpha 1 isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.2 131 2 C cysteine 0.6 9 1 D aspartate 3.7 53 2 E glutamate 5.2 74 2 F phenylalanine 1.7 24 1 G glycine 28.3 401 2 H histidine 0.6 8 1 I isoleucine 2.0 29 2 K lysine 4.5 64 2 L leucine 3.7 53 2 M methionine 1.1 16 1 N asparagine 2.2 31 2 P proline 18.6 264 2 Q glutamine 4.0 57 1 R arginine 5.0 71 1 S serine 3.2 45 2 T threonine 2.8 40 1 V valine 2.3 33 1 W tryptophan 0.4 6 2 Y tyrosine 0.6 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL2A1 0.983 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL1A1 0.710 alpha 1 type I collagen preproprotein COL5A2 0.643 alpha 2 type V collagen preproprotein COL1A2 0.597 alpha 2 type I collagen COL3A1 0.589 collagen type III alpha 1 preproprotein COL5A1 0.412 alpha 1 type V collagen preproprotein COL11A1 0.395 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.395 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.395 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A3 0.376 collagen, type V, alpha 3 preproprotein COL11A2 0.373 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.372 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.372 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL24A1 0.321 collagen, type XXIV, alpha 1 COL27A1 0.312 collagen, type XXVII, alpha 1 COL4A5 0.309 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.307 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.307 type IV collagen alpha 5 isoform 2 precursor COL7A1 0.306 alpha 1 type VII collagen precursor COL4A1 0.300 alpha 1 type IV collagen preproprotein COL4A4 0.295 alpha 4 type IV collagen precursor COL4A3 0.288 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.288 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.288 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.288 alpha 3 type IV collagen isoform 1 precursor COL22A1 0.286 collagen, type XXII, alpha 1 COL4A2 0.280 alpha 2 type IV collagen preproprotein COL4A6 0.274 type IV alpha 6 collagen isoform A precursor COL4A6 0.274 type IV alpha 6 collagen isoform B precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.