Guide to the Human Genome
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Name: SCARA3 Sequence: fasta or formatted (606aa) NCBI GI: 33598924
Description:

scavenger receptor class A, member 3 isoform 1

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [466aa] scavenger receptor class A, member 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         29           2
 C cysteine            1.5          9           1
 D aspartate           5.0         30           2
 E glutamate           5.8         35           2
 F phenylalanine       2.8         17           1
 G glycine            12.5         76           2
 H histidine           2.6         16           1
 I isoleucine          4.1         25           1
 K lysine              4.6         28           2
 L leucine            11.2         68           3
 M methionine          2.3         14           1
 N asparagine          3.1         19           2
 P proline             7.1         43           2
 Q glutamine           6.9         42           1
 R arginine            4.8         29           1
 S serine              7.4         45           2
 T threonine           5.9         36           2
 V valine              5.3         32           1
 W tryptophan          0.5          3           1
 Y tyrosine            1.7         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scavenger receptor class A, member 3 isoform 1 [Homo... 
SCARA3                0.727   scavenger receptor class A, member 3 isoform 2 [Homo...
COLEC12               0.271   collectin sub-family member 12 
COL5A1                0.111   alpha 1 type V collagen preproprotein 
COL1A1                0.110   alpha 1 type I collagen preproprotein 
COL8A1                0.110   alpha 1 type VIII collagen precursor 
COL8A1                0.110   alpha 1 type VIII collagen precursor 
COL3A1                0.110   collagen type III alpha 1 preproprotein 
COL2A1                0.110   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.110   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL9A3                0.110   alpha 3 type IX collagen 
COL11A2               0.109   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.109   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.109   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL5A3                0.109   collagen, type V, alpha 3 preproprotein 
COL11A1               0.108   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.108   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.108   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A2                0.108   alpha 2 type V collagen preproprotein 
COL4A3                0.107   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.107   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.107   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.107   alpha 3 type IV collagen isoform 1 precursor 
COL23A1               0.107   collagen, type XXIII, alpha 1 
COL19A1               0.106   alpha 1 type XIX collagen precursor 
COL1A2                0.106   alpha 2 type I collagen 
COL24A1               0.105   collagen, type XXIV, alpha 1 
COL4A1                0.105   alpha 1 type IV collagen preproprotein 
COL4A5                0.105   type IV collagen alpha 5 isoform 2 precursor 
COLQ                  0.104   acetylcholinesterase collagen-like tail subunit iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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