Guide to the Human Genome
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Name: COL11A1 Sequence: fasta or formatted (1806aa) NCBI GI: 98985806
Description:

alpha 1 type XI collagen isoform A preproprotein

Referenced in:

Collagen

Other entries for this name:
alt prot [1767aa] alpha 1 type XI collagen isoform C preproprotein
alt prot [1818aa] alpha 1 type XI collagen isoform B preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         98           2
 C cysteine            0.6         11           1
 D aspartate           5.5         99           2
 E glutamate           6.8        123           2
 F phenylalanine       2.6         47           1
 G glycine            23.4        422           2
 H histidine           0.9         17           1
 I isoleucine          3.1         56           2
 K lysine              5.9        106           3
 L leucine             4.4         80           2
 M methionine          1.3         24           1
 N asparagine          2.0         37           2
 P proline            15.9        287           2
 Q glutamine           4.5         81           2
 R arginine            3.8         68           2
 S serine              4.0         73           2
 T threonine           3.8         69           2
 V valine              3.5         63           2
 W tryptophan          0.5          9           1
 Y tyrosine            2.0         36           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 1 type XI collagen isoform A preproprotein [Ho... 
COL11A1               0.976   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.975   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL5A1                0.751   alpha 1 type V collagen preproprotein 
COL11A2               0.635   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A2               0.576   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.576   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL5A3                0.542   collagen, type V, alpha 3 preproprotein 
COL2A1                0.312   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.312   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A2                0.305   alpha 2 type V collagen preproprotein 
COL1A1                0.303   alpha 1 type I collagen preproprotein 
COL1A2                0.283   alpha 2 type I collagen 
COL3A1                0.279   collagen type III alpha 1 preproprotein 
COL4A5                0.251   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.249   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.249   type IV collagen alpha 5 isoform 3 precursor 
COL27A1               0.239   collagen, type XXVII, alpha 1 
COL7A1                0.236   alpha 1 type VII collagen precursor 
COL4A1                0.232   alpha 1 type IV collagen preproprotein 
COL24A1               0.230   collagen, type XXIV, alpha 1 
COL4A4                0.229   alpha 4 type IV collagen precursor 
COL4A3                0.228   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.228   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.228   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.228   alpha 3 type IV collagen isoform 1 precursor 
COL22A1               0.220   collagen, type XXII, alpha 1 
COL4A6                0.209   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.209   type IV alpha 6 collagen isoform B precursor 
COL16A1               0.208   alpha 1 type XVI collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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