COL11A1 37728

Name: COL11A1	Sequence: fasta or formatted (1818aa)		NCBI GI: 98985810
Description: alpha 1 type XI collagen isoform B preproprotein		Referenced in: Collagen
Other entries for this name: alt prot [1806aa] alpha 1 type XI collagen isoform A preproprotein alt prot [1767aa] alpha 1 type XI collagen isoform C preproprotein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 98 2 C cysteine 0.6 11 1 D aspartate 5.3 97 2 E glutamate 6.3 114 2 F phenylalanine 2.8 50 1 G glycine 23.2 421 2 H histidine 0.9 17 1 I isoleucine 2.9 53 1 K lysine 6.9 125 4 L leucine 4.5 81 2 M methionine 1.4 25 1 N asparagine 2.1 38 2 P proline 15.8 287 2 Q glutamine 4.5 81 2 R arginine 3.8 69 2 S serine 4.4 80 2 T threonine 3.7 67 2 V valine 3.5 63 2 W tryptophan 0.5 9 1 Y tyrosine 1.8 32 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.971 alpha 1 type XI collagen isoform A preproprotein [Ho... COL11A1 0.969 alpha 1 type XI collagen isoform C preproprotein [Ho... COL5A1 0.745 alpha 1 type V collagen preproprotein COL11A2 0.632 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A2 0.573 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.573 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL5A3 0.540 collagen, type V, alpha 3 preproprotein COL2A1 0.311 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.310 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A2 0.303 alpha 2 type V collagen preproprotein COL1A1 0.302 alpha 1 type I collagen preproprotein COL1A2 0.282 alpha 2 type I collagen COL3A1 0.278 collagen type III alpha 1 preproprotein COL4A5 0.249 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.248 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.248 type IV collagen alpha 5 isoform 3 precursor COL27A1 0.238 collagen, type XXVII, alpha 1 COL7A1 0.235 alpha 1 type VII collagen precursor COL4A1 0.231 alpha 1 type IV collagen preproprotein COL24A1 0.229 collagen, type XXIV, alpha 1 COL4A4 0.227 alpha 4 type IV collagen precursor COL4A3 0.226 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.226 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.226 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.226 alpha 3 type IV collagen isoform 1 precursor COL22A1 0.218 collagen, type XXII, alpha 1 COL4A6 0.208 type IV alpha 6 collagen isoform A precursor COL4A6 0.208 type IV alpha 6 collagen isoform B precursor COL16A1 0.207 alpha 1 type XVI collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.