Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: COL11A1 Sequence: fasta or formatted (1818aa) NCBI GI: 98985810
Description:

alpha 1 type XI collagen isoform B preproprotein

Referenced in:

Collagen

Other entries for this name:
alt prot [1806aa] alpha 1 type XI collagen isoform A preproprotein
alt prot [1767aa] alpha 1 type XI collagen isoform C preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         98           2
 C cysteine            0.6         11           1
 D aspartate           5.3         97           2
 E glutamate           6.3        114           2
 F phenylalanine       2.8         50           1
 G glycine            23.2        421           2
 H histidine           0.9         17           1
 I isoleucine          2.9         53           1
 K lysine              6.9        125           4
 L leucine             4.5         81           2
 M methionine          1.4         25           1
 N asparagine          2.1         38           2
 P proline            15.8        287           2
 Q glutamine           4.5         81           2
 R arginine            3.8         69           2
 S serine              4.4         80           2
 T threonine           3.7         67           2
 V valine              3.5         63           2
 W tryptophan          0.5          9           1
 Y tyrosine            1.8         32           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 1 type XI collagen isoform B preproprotein [Ho... 
COL11A1               0.971   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL11A1               0.969   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL5A1                0.745   alpha 1 type V collagen preproprotein 
COL11A2               0.632   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A2               0.573   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.573   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL5A3                0.540   collagen, type V, alpha 3 preproprotein 
COL2A1                0.311   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.310   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A2                0.303   alpha 2 type V collagen preproprotein 
COL1A1                0.302   alpha 1 type I collagen preproprotein 
COL1A2                0.282   alpha 2 type I collagen 
COL3A1                0.278   collagen type III alpha 1 preproprotein 
COL4A5                0.249   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.248   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.248   type IV collagen alpha 5 isoform 3 precursor 
COL27A1               0.238   collagen, type XXVII, alpha 1 
COL7A1                0.235   alpha 1 type VII collagen precursor 
COL4A1                0.231   alpha 1 type IV collagen preproprotein 
COL24A1               0.229   collagen, type XXIV, alpha 1 
COL4A4                0.227   alpha 4 type IV collagen precursor 
COL4A3                0.226   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.226   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.226   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.226   alpha 3 type IV collagen isoform 1 precursor 
COL22A1               0.218   collagen, type XXII, alpha 1 
COL4A6                0.208   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.208   type IV alpha 6 collagen isoform B precursor 
COL16A1               0.207   alpha 1 type XVI collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press