COL11A1 37727

Name: COL11A1	Sequence: fasta or formatted (1767aa)		NCBI GI: 98985808
Description: alpha 1 type XI collagen isoform C preproprotein		Referenced in: Collagen
Other entries for this name: alt prot [1806aa] alpha 1 type XI collagen isoform A preproprotein alt prot [1818aa] alpha 1 type XI collagen isoform B preproprotein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 94 2 C cysteine 0.6 11 1 D aspartate 5.5 97 2 E glutamate 6.3 112 2 F phenylalanine 2.7 47 1 G glycine 23.8 420 2 H histidine 1.0 17 1 I isoleucine 3.0 53 1 K lysine 5.9 105 3 L leucine 4.5 80 2 M methionine 1.4 24 1 N asparagine 2.1 37 2 P proline 16.1 285 2 Q glutamine 4.5 80 2 R arginine 3.8 68 2 S serine 4.1 72 2 T threonine 3.6 64 2 V valine 3.5 61 2 W tryptophan 0.5 9 1 Y tyrosine 1.8 31 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.995 alpha 1 type XI collagen isoform A preproprotein [Ho... COL11A1 0.994 alpha 1 type XI collagen isoform B preproprotein [Ho... COL5A1 0.762 alpha 1 type V collagen preproprotein COL11A2 0.650 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A2 0.641 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.587 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL5A3 0.552 collagen, type V, alpha 3 preproprotein COL2A1 0.319 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.318 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A2 0.311 alpha 2 type V collagen preproprotein COL1A1 0.309 alpha 1 type I collagen preproprotein COL1A2 0.289 alpha 2 type I collagen COL3A1 0.285 collagen type III alpha 1 preproprotein COL4A5 0.256 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.255 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.254 type IV collagen alpha 5 isoform 3 precursor COL27A1 0.244 collagen, type XXVII, alpha 1 COL7A1 0.241 alpha 1 type VII collagen precursor COL4A1 0.237 alpha 1 type IV collagen preproprotein COL24A1 0.235 collagen, type XXIV, alpha 1 COL4A4 0.233 alpha 4 type IV collagen precursor COL4A3 0.232 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.232 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.232 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.232 alpha 3 type IV collagen isoform 1 precursor COL22A1 0.224 collagen, type XXII, alpha 1 COL4A6 0.213 type IV alpha 6 collagen isoform A precursor COL4A6 0.213 type IV alpha 6 collagen isoform B precursor COL16A1 0.212 alpha 1 type XVI collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.