Guide to the Human Genome
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Name: COL19A1 Sequence: fasta or formatted (1142aa) NCBI GI: 47778921
Description:

alpha 1 type XIX collagen precursor

Referenced in:

Collagen

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         52           2
 C cysteine            1.2         14           2
 D aspartate           4.3         49           1
 E glutamate           5.9         67           2
 F phenylalanine       2.2         25           1
 G glycine            22.9        261           2
 H histidine           1.4         16           1
 I isoleucine          5.0         57           2
 K lysine              6.7         77           2
 L leucine             6.2         71           2
 M methionine          1.6         18           1
 N asparagine          2.6         30           1
 P proline            15.1        173           2
 Q glutamine           4.0         46           2
 R arginine            4.1         47           2
 S serine              4.6         53           2
 T threonine           2.6         30           1
 V valine              2.9         33           2
 W tryptophan          0.6          7           1
 Y tyrosine            1.4         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 1 type XIX collagen precursor 
COL22A1               0.304   collagen, type XXII, alpha 1 
COL16A1               0.295   alpha 1 type XVI collagen precursor 
LOC100293055          0.273   PREDICTED: similar to COL22A1 protein 
COL4A5                0.259   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.259   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.259   type IV collagen alpha 5 isoform 3 precursor 
COL3A1                0.252   collagen type III alpha 1 preproprotein 
COL5A1                0.252   alpha 1 type V collagen preproprotein 
COL4A1                0.248   alpha 1 type IV collagen preproprotein 
COL11A2               0.248   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.248   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.248   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A1               0.247   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.247   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.247   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL2A1                0.244   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.244   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A3                0.243   collagen, type V, alpha 3 preproprotein 
COL4A3                0.243   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.243   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.243   alpha 3 type IV collagen isoform 1 precursor 
COL7A1                0.242   alpha 1 type VII collagen precursor 
COL1A1                0.240   alpha 1 type I collagen preproprotein 
COL4A3                0.237   alpha 3 type IV collagen isoform 5 precursor 
COL5A2                0.236   alpha 2 type V collagen preproprotein 
COL4A4                0.235   alpha 4 type IV collagen precursor 
COL27A1               0.234   collagen, type XXVII, alpha 1 
COL4A2                0.234   alpha 2 type IV collagen preproprotein 
COL1A2                0.225   alpha 2 type I collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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