Guide to the Human Genome
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Name: CAPN2 Sequence: fasta or formatted (700aa) NCBI GI: 157389005
Description:

calpain 2 isoform 1

Referenced in:

Cysteine Proteases

Other entries for this name:
alt prot [622aa] calpain 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         46           2
 C cysteine            2.1         15           1
 D aspartate           6.9         48           2
 E glutamate           9.7         68           3
 F phenylalanine       5.7         40           2
 G glycine             7.3         51           2
 H histidine           1.4         10           1
 I isoleucine          6.9         48           2
 K lysine              5.9         41           2
 L leucine             9.6         67           2
 M methionine          1.6         11           1
 N asparagine          3.9         27           1
 P proline             3.4         24           3
 Q glutamine           3.7         26           1
 R arginine            5.9         41           3
 S serine              5.7         40           2
 T threonine           5.1         36           2
 V valine              3.6         25           3
 W tryptophan          2.3         16           1
 Y tyrosine            2.9         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 2 isoform 1 
CAPN2                 0.887   calpain 2 isoform 2 
CAPN1                 0.658   calpain 1, large subunit 
CAPN8                 0.635   calpain 8 
CAPN11                0.539   calpain 11 
CAPN3                 0.505   calpain 3 isoform c 
CAPN9                 0.497   calpain 9 isoform 1 
CAPN3                 0.480   calpain 3 isoform b 
CAPN3                 0.479   calpain 3 isoform a 
CAPN9                 0.470   calpain 9 isoform 2 
CAPN3                 0.462   calpain 3 isoform f 
CAPN12                0.374   calpain 12 
CAPN14                0.312   calpain 14 
CAPN5                 0.226   calpain 5 
CAPN13                0.203   calpain 13 
CAPN6                 0.191   calpain 6 
CAPN3                 0.148   calpain 3 isoform d 
CAPN10                0.138   calpain 10 isoform a 
CAPN10                0.132   calpain 10 isoform c 
CAPNS1                0.110   calpain, small subunit 1 
CAPNS1                0.110   calpain, small subunit 1 
CAPNS2                0.103   calpain small subunit 2 
CAPN3                 0.095   calpain 3 isoform e 
CAPN3                 0.095   calpain 3 isoform e 
SOLH                  0.089   small optic lobes 
SRI                   0.049   sorcin isoform b 
SRI                   0.049   sorcin isoform a 
CAPN7                 0.049   calpain 7 
GCA                   0.048   grancalcin, EF-hand calcium binding protein 
PEF1                  0.035   penta-EF-hand domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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