CAPN3 29885

Name: CAPN3	Sequence: fasta or formatted (821aa)		NCBI GI: 4557405
Description: calpain 3 isoform a		Referenced in: Cysteine Proteases
Other entries for this name: alt prot [815aa] calpain 3 isoform b alt prot [729aa] calpain 3 isoform c alt prot [309aa] calpain 3 isoform d alt prot [156aa] calpain 3 isoform e alt prot [156aa] calpain 3 isoform e alt prot [728aa] calpain 3 isoform f
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 44 2 C cysteine 1.9 16 2 D aspartate 6.9 57 3 E glutamate 7.3 60 2 F phenylalanine 5.6 46 2 G glycine 6.2 51 3 H histidine 2.6 21 2 I isoleucine 5.7 47 2 K lysine 7.1 58 4 L leucine 7.2 59 2 M methionine 2.7 22 1 N asparagine 5.0 41 2 P proline 4.8 39 2 Q glutamine 4.5 37 3 R arginine 5.2 43 2 S serine 6.6 54 2 T threonine 4.9 40 2 V valine 5.4 44 2 W tryptophan 2.1 17 1 Y tyrosine 3.0 25 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain 3 isoform a CAPN3 0.989 calpain 3 isoform b CAPN3 0.865 calpain 3 isoform c CAPN3 0.863 calpain 3 isoform f CAPN9 0.448 calpain 9 isoform 1 CAPN1 0.428 calpain 1, large subunit CAPN9 0.427 calpain 9 isoform 2 CAPN2 0.403 calpain 2 isoform 1 CAPN2 0.386 calpain 2 isoform 2 CAPN11 0.385 calpain 11 CAPN8 0.370 calpain 8 CAPN3 0.363 calpain 3 isoform d CAPN12 0.271 calpain 12 CAPN14 0.250 calpain 14 CAPN5 0.200 calpain 5 CAPN3 0.181 calpain 3 isoform e CAPN3 0.181 calpain 3 isoform e CAPN13 0.164 calpain 13 CAPN6 0.160 calpain 6 CAPNS1 0.119 calpain, small subunit 1 CAPNS1 0.119 calpain, small subunit 1 CAPN10 0.113 calpain 10 isoform a CAPNS2 0.110 calpain small subunit 2 CAPN10 0.110 calpain 10 isoform c SOLH 0.079 small optic lobes SRI 0.046 sorcin isoform b SRI 0.046 sorcin isoform a GCA 0.043 grancalcin, EF-hand calcium binding protein PDCD6 0.033 programmed cell death 6 CAPN7 0.032 calpain 7 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.