Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CAPN3 Sequence: fasta or formatted (156aa) NCBI GI: 27765080
Description:

calpain 3 isoform e

Referenced in:

Cysteine Proteases

Other entries for this name:
alt prot [815aa] calpain 3 isoform b
alt prot [729aa] calpain 3 isoform c
alt prot [309aa] calpain 3 isoform d
alt mRNA [156aa] calpain 3 isoform e
alt prot [821aa] calpain 3 isoform a
alt prot [728aa] calpain 3 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          9           1
 C cysteine            2.6          4           2
 D aspartate           9.0         14           1
 E glutamate           4.5          7           1
 F phenylalanine       6.4         10           1
 G glycine             5.1          8           1
 H histidine           5.1          8           2
 I isoleucine          7.1         11           2
 K lysine              8.3         13           2
 L leucine             9.6         15           1
 M methionine          5.1          8           1
 N asparagine          7.1         11           2
 P proline             0.0          0           0
 Q glutamine           3.2          5           1
 R arginine            3.2          5           1
 S serine              3.8          6           1
 T threonine           5.1          8           1
 V valine              3.8          6           2
 W tryptophan          1.9          3           1
 Y tyrosine            3.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 3 isoform e 
CAPN3                 1.000   calpain 3 isoform f 
CAPN3                 1.000   calpain 3 isoform a 
CAPN3                 1.000   calpain 3 isoform b 
CAPN3                 1.000   calpain 3 isoform e 
CAPN3                 1.000   calpain 3 isoform d 
CAPN3                 1.000   calpain 3 isoform c 
CAPNS1                0.562   calpain, small subunit 1 
CAPNS1                0.562   calpain, small subunit 1 
CAPN1                 0.539   calpain 1, large subunit 
CAPNS2                0.536   calpain small subunit 2 
CAPN2                 0.441   calpain 2 isoform 1 
CAPN2                 0.441   calpain 2 isoform 2 
CAPN11                0.441   calpain 11 
CAPN9                 0.411   calpain 9 isoform 2 
CAPN9                 0.411   calpain 9 isoform 1 
CAPN8                 0.382   calpain 8 
CAPN12                0.247   calpain 12 
CAPN14                0.230   calpain 14 
SRI                   0.220   sorcin isoform b 
SRI                   0.220   sorcin isoform a 
CAPN13                0.217   calpain 13 
GCA                   0.201   grancalcin, EF-hand calcium binding protein 
PDCD6                 0.174   programmed cell death 6 
PEF1                  0.168   penta-EF-hand domain containing 1 
CALML5                0.079   calmodulin-like 5 
CALM3                 0.056   calmodulin 3 
CALM2                 0.056   calmodulin 2 
CALM1                 0.056   calmodulin 1 
CAPSL                 0.056   calcyphosine-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press