Guide to the Human Genome
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Name: CAPNS1 Sequence: fasta or formatted (268aa) NCBI GI: 51599151
Description:

calpain, small subunit 1

Referenced in:

Cysteine Proteases

Other entries for this name:
alt mRNA [268aa] calpain, small subunit 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         17           3
 C cysteine            1.1          3           1
 D aspartate           5.6         15           2
 E glutamate           5.6         15           2
 F phenylalanine       5.2         14           1
 G glycine            19.0         51          20
 H histidine           1.5          4           1
 I isoleucine          5.6         15           2
 K lysine              3.4          9           1
 L leucine             8.2         22           1
 M methionine          3.7         10           1
 N asparagine          5.2         14           2
 P proline             2.6          7           4
 Q glutamine           3.4          9           1
 R arginine            4.9         13           2
 S serine              6.3         17           2
 T threonine           4.5         12           2
 V valine              4.1         11           2
 W tryptophan          1.1          3           1
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain, small subunit 1 
CAPNS1                1.000   calpain, small subunit 1 
CAPNS2                0.594   calpain small subunit 2 
CAPN3                 0.378   calpain 3 isoform f 
CAPN3                 0.378   calpain 3 isoform a 
CAPN3                 0.378   calpain 3 isoform b 
CAPN3                 0.378   calpain 3 isoform d 
CAPN3                 0.376   calpain 3 isoform c 
CAPN3                 0.324   calpain 3 isoform e 
CAPN3                 0.324   calpain 3 isoform e 
CAPN1                 0.313   calpain 1, large subunit 
CAPN2                 0.294   calpain 2 isoform 1 
CAPN2                 0.294   calpain 2 isoform 2 
CAPN9                 0.266   calpain 9 isoform 2 
CAPN9                 0.266   calpain 9 isoform 1 
CAPN11                0.249   calpain 11 
CAPN8                 0.237   calpain 8 
SRI                   0.154   sorcin isoform a 
SRI                   0.152   sorcin isoform b 
CAPN13                0.146   calpain 13 
GCA                   0.139   grancalcin, EF-hand calcium binding protein 
CAPN12                0.135   calpain 12 
PEF1                  0.120   penta-EF-hand domain containing 1 
CAPN14                0.114   calpain 14 
PDCD6                 0.102   programmed cell death 6 
FAM98B                0.091   family with sequence similarity 98, member B isofor...
KRT1                  0.080   keratin 1 
FBL                   0.078   fibrillarin 
ZIC2                  0.078   zinc finger protein of the cerebellum 2 
ARID1B                0.074   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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