Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CAPN3 Sequence: fasta or formatted (729aa) NCBI GI: 27765074
Description:

calpain 3 isoform c

Referenced in:

Cysteine Proteases

Other entries for this name:
alt prot [815aa] calpain 3 isoform b
alt prot [309aa] calpain 3 isoform d
alt prot [156aa] calpain 3 isoform e
alt prot [156aa] calpain 3 isoform e
alt prot [821aa] calpain 3 isoform a
alt prot [728aa] calpain 3 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         42           2
 C cysteine            2.2         16           2
 D aspartate           6.6         48           3
 E glutamate           7.4         54           2
 F phenylalanine       6.2         45           2
 G glycine             5.9         43           3
 H histidine           2.9         21           2
 I isoleucine          6.0         44           2
 K lysine              6.6         48           2
 L leucine             7.3         53           2
 M methionine          2.5         18           1
 N asparagine          4.8         35           2
 P proline             4.5         33           2
 Q glutamine           4.4         32           3
 R arginine            5.1         37           2
 S serine              6.0         44           2
 T threonine           4.7         34           2
 V valine              5.6         41           2
 W tryptophan          2.3         17           1
 Y tyrosine            3.3         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 3 isoform c 
CAPN3                 0.972   calpain 3 isoform b 
CAPN3                 0.971   calpain 3 isoform a 
CAPN3                 0.831   calpain 3 isoform f 
CAPN9                 0.528   calpain 9 isoform 1 
CAPN1                 0.508   calpain 1, large subunit 
CAPN9                 0.504   calpain 9 isoform 2 
CAPN2                 0.476   calpain 2 isoform 1 
CAPN8                 0.467   calpain 8 
CAPN2                 0.458   calpain 2 isoform 2 
CAPN11                0.454   calpain 11 
CAPN3                 0.335   calpain 3 isoform d 
CAPN12                0.323   calpain 12 
CAPN14                0.301   calpain 14 
CAPN5                 0.239   calpain 5 
CAPN13                0.204   calpain 13 
CAPN3                 0.203   calpain 3 isoform e 
CAPN3                 0.203   calpain 3 isoform e 
CAPN6                 0.193   calpain 6 
CAPNS1                0.132   calpain, small subunit 1 
CAPNS1                0.132   calpain, small subunit 1 
CAPN10                0.130   calpain 10 isoform a 
CAPN10                0.126   calpain 10 isoform c 
CAPNS2                0.123   calpain small subunit 2 
SOLH                  0.095   small optic lobes 
SRI                   0.052   sorcin isoform b 
SRI                   0.052   sorcin isoform a 
GCA                   0.048   grancalcin, EF-hand calcium binding protein 
CAPN7                 0.045   calpain 7 
PDCD6                 0.037   programmed cell death 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press