CAPN3 24520

Name: CAPN3	Sequence: fasta or formatted (729aa)		NCBI GI: 27765074
Description: calpain 3 isoform c		Referenced in: Cysteine Proteases
Other entries for this name: alt prot [815aa] calpain 3 isoform b alt prot [309aa] calpain 3 isoform d alt prot [156aa] calpain 3 isoform e alt prot [156aa] calpain 3 isoform e alt prot [821aa] calpain 3 isoform a alt prot [728aa] calpain 3 isoform f
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 42 2 C cysteine 2.2 16 2 D aspartate 6.6 48 3 E glutamate 7.4 54 2 F phenylalanine 6.2 45 2 G glycine 5.9 43 3 H histidine 2.9 21 2 I isoleucine 6.0 44 2 K lysine 6.6 48 2 L leucine 7.3 53 2 M methionine 2.5 18 1 N asparagine 4.8 35 2 P proline 4.5 33 2 Q glutamine 4.4 32 3 R arginine 5.1 37 2 S serine 6.0 44 2 T threonine 4.7 34 2 V valine 5.6 41 2 W tryptophan 2.3 17 1 Y tyrosine 3.3 24 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain 3 isoform c CAPN3 0.972 calpain 3 isoform b CAPN3 0.971 calpain 3 isoform a CAPN3 0.831 calpain 3 isoform f CAPN9 0.528 calpain 9 isoform 1 CAPN1 0.508 calpain 1, large subunit CAPN9 0.504 calpain 9 isoform 2 CAPN2 0.476 calpain 2 isoform 1 CAPN8 0.467 calpain 8 CAPN2 0.458 calpain 2 isoform 2 CAPN11 0.454 calpain 11 CAPN3 0.335 calpain 3 isoform d CAPN12 0.323 calpain 12 CAPN14 0.301 calpain 14 CAPN5 0.239 calpain 5 CAPN13 0.204 calpain 13 CAPN3 0.203 calpain 3 isoform e CAPN3 0.203 calpain 3 isoform e CAPN6 0.193 calpain 6 CAPNS1 0.132 calpain, small subunit 1 CAPNS1 0.132 calpain, small subunit 1 CAPN10 0.130 calpain 10 isoform a CAPN10 0.126 calpain 10 isoform c CAPNS2 0.123 calpain small subunit 2 SOLH 0.095 small optic lobes SRI 0.052 sorcin isoform b SRI 0.052 sorcin isoform a GCA 0.048 grancalcin, EF-hand calcium binding protein CAPN7 0.045 calpain 7 PDCD6 0.037 programmed cell death 6 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.