Guide to the Human Genome
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Name: SOLH Sequence: fasta or formatted (1086aa) NCBI GI: 5032105
Description:

small optic lobes

Referenced in:

Cysteine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0        109           2
 C cysteine            4.2         46           2
 D aspartate           3.7         40           2
 E glutamate           7.2         78           4
 F phenylalanine       3.1         34           1
 G glycine             8.3         90           3
 H histidine           2.9         32           1
 I isoleucine          1.8         20           2
 K lysine              2.6         28           2
 L leucine             9.3        101           2
 M methionine          1.1         12           1
 N asparagine          2.1         23           2
 P proline             9.3        101           3
 Q glutamine           3.8         41           2
 R arginine            7.2         78           3
 S serine              8.2         89           2
 T threonine           4.6         50           2
 V valine              7.3         79           3
 W tryptophan          2.1         23           1
 Y tyrosine            1.1         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small optic lobes 
CAPN11                0.064   calpain 11 
CAPN12                0.063   calpain 12 
CAPN3                 0.063   calpain 3 isoform c 
CAPN3                 0.059   calpain 3 isoform a 
CAPN3                 0.059   calpain 3 isoform b 
CAPN14                0.059   calpain 14 
CAPN1                 0.059   calpain 1, large subunit 
CAPN8                 0.058   calpain 8 
CAPN2                 0.056   calpain 2 isoform 1 
CAPN5                 0.054   calpain 5 
CAPN9                 0.054   calpain 9 isoform 1 
CAPN3                 0.053   calpain 3 isoform f 
CAPN2                 0.050   calpain 2 isoform 2 
CAPN9                 0.045   calpain 9 isoform 2 
CAPN10                0.044   calpain 10 isoform c 
CAPN10                0.044   calpain 10 isoform a 
CAPN13                0.042   calpain 13 
CAPN7                 0.038   calpain 7 
CAPN6                 0.032   calpain 6 
RNF31                 0.014   ring finger protein 31 
RANBP2                0.013   RAN binding protein 2 
PRR12                 0.013   proline rich 12 
ENAH                  0.013   enabled homolog isoform a 
ENAH                  0.013   enabled homolog isoform b 
WASF2                 0.013   WAS protein family, member 2 
WIPF3                 0.012   WAS/WASL interacting protein family, member 3 [Homo...
NACA                  0.011   nascent polypeptide-associated complex alpha subuni...
SETD1B                0.011   SET domain containing 1B 
CPSF6                 0.011   cleavage and polyadenylation specific factor 6, 68 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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