CAPN3 24522

Name: CAPN3	Sequence: fasta or formatted (156aa)		NCBI GI: 27765078
Description: calpain 3 isoform e		Referenced in: Cysteine Proteases
Other entries for this name: alt prot [815aa] calpain 3 isoform b alt prot [729aa] calpain 3 isoform c alt prot [309aa] calpain 3 isoform d alt mRNA [156aa] calpain 3 isoform e alt prot [821aa] calpain 3 isoform a alt prot [728aa] calpain 3 isoform f
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 9 1 C cysteine 2.6 4 2 D aspartate 9.0 14 1 E glutamate 4.5 7 1 F phenylalanine 6.4 10 1 G glycine 5.1 8 1 H histidine 5.1 8 2 I isoleucine 7.1 11 2 K lysine 8.3 13 2 L leucine 9.6 15 1 M methionine 5.1 8 1 N asparagine 7.1 11 2 P proline 0.0 0 0 Q glutamine 3.2 5 1 R arginine 3.2 5 1 S serine 3.8 6 1 T threonine 5.1 8 1 V valine 3.8 6 2 W tryptophan 1.9 3 1 Y tyrosine 3.2 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain 3 isoform e CAPN3 1.000 calpain 3 isoform f CAPN3 1.000 calpain 3 isoform a CAPN3 1.000 calpain 3 isoform b CAPN3 1.000 calpain 3 isoform e CAPN3 1.000 calpain 3 isoform d CAPN3 1.000 calpain 3 isoform c CAPNS1 0.562 calpain, small subunit 1 CAPNS1 0.562 calpain, small subunit 1 CAPN1 0.539 calpain 1, large subunit CAPNS2 0.536 calpain small subunit 2 CAPN2 0.441 calpain 2 isoform 1 CAPN2 0.441 calpain 2 isoform 2 CAPN11 0.441 calpain 11 CAPN9 0.411 calpain 9 isoform 2 CAPN9 0.411 calpain 9 isoform 1 CAPN8 0.382 calpain 8 CAPN12 0.247 calpain 12 CAPN14 0.230 calpain 14 SRI 0.220 sorcin isoform b SRI 0.220 sorcin isoform a CAPN13 0.217 calpain 13 GCA 0.201 grancalcin, EF-hand calcium binding protein PDCD6 0.174 programmed cell death 6 PEF1 0.168 penta-EF-hand domain containing 1 CALML5 0.079 calmodulin-like 5 CALM3 0.056 calmodulin 3 CALM2 0.056 calmodulin 2 CALM1 0.056 calmodulin 1 CAPSL 0.056 calcyphosine-like Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.