Guide to the Human Genome
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Name: CAPNS2 Sequence: fasta or formatted (248aa) NCBI GI: 14161692
Description:

calpain small subunit 2

Referenced in:

Cysteine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         17           4
 C cysteine            1.2          3           1
 D aspartate           6.9         17           1
 E glutamate           6.0         15           2
 F phenylalanine       5.6         14           1
 G glycine            10.9         27           4
 H histidine           1.2          3           1
 I isoleucine          4.4         11           1
 K lysine              4.8         12           2
 L leucine            10.1         25           2
 M methionine          3.2          8           1
 N asparagine          4.0         10           2
 P proline             2.0          5           3
 Q glutamine           6.5         16           2
 R arginine            6.5         16           2
 S serine              6.9         17           2
 T threonine           4.0         10           2
 V valine              4.8         12           1
 W tryptophan          1.2          3           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain small subunit 2 
CAPNS1                0.658   calpain, small subunit 1 
CAPNS1                0.658   calpain, small subunit 1 
CAPN3                 0.389   calpain 3 isoform f 
CAPN3                 0.389   calpain 3 isoform a 
CAPN3                 0.389   calpain 3 isoform b 
CAPN3                 0.389   calpain 3 isoform d 
CAPN3                 0.387   calpain 3 isoform c 
CAPN1                 0.357   calpain 1, large subunit 
CAPN3                 0.342   calpain 3 isoform e 
CAPN3                 0.342   calpain 3 isoform e 
CAPN2                 0.305   calpain 2 isoform 1 
CAPN2                 0.305   calpain 2 isoform 2 
CAPN9                 0.296   calpain 9 isoform 2 
CAPN9                 0.296   calpain 9 isoform 1 
CAPN11                0.286   calpain 11 
CAPN8                 0.282   calpain 8 
SRI                   0.155   sorcin isoform b 
SRI                   0.155   sorcin isoform a 
CAPN14                0.147   calpain 14 
GCA                   0.147   grancalcin, EF-hand calcium binding protein 
PDCD6                 0.141   programmed cell death 6 
CAPN12                0.139   calpain 12 
CAPN13                0.130   calpain 13 
PEF1                  0.120   penta-EF-hand domain containing 1 
SLC25A24              0.057   solute carrier family 25 member 24 isoform 2 
SLC25A24              0.048   solute carrier family 25 member 24 isoform 1 
CALML5                0.042   calmodulin-like 5 
SLC25A25              0.042   solute carrier family 25, member 25 isoform c 
LOC100292202          0.042   PREDICTED: similar to solute carrier family 25, mem...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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