CAPN1 2697

Name: CAPN1	Sequence: fasta or formatted (714aa)		NCBI GI: 12408656
Description: calpain 1, large subunit		Referenced in: Cysteine Proteases
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 39 2 C cysteine 1.5 11 2 D aspartate 6.6 47 2 E glutamate 7.7 55 3 F phenylalanine 6.2 44 2 G glycine 7.1 51 2 H histidine 1.3 9 1 I isoleucine 4.5 32 2 K lysine 5.2 37 2 L leucine 10.2 73 2 M methionine 2.2 16 1 N asparagine 3.9 28 2 P proline 3.5 25 2 Q glutamine 3.6 26 1 R arginine 7.3 52 3 S serine 6.9 49 3 T threonine 5.0 36 2 V valine 6.4 46 3 W tryptophan 2.2 16 1 Y tyrosine 3.1 22 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain 1, large subunit CAPN2 0.650 calpain 2 isoform 1 CAPN8 0.588 calpain 8 CAPN2 0.580 calpain 2 isoform 2 CAPN11 0.558 calpain 11 CAPN3 0.532 calpain 3 isoform c CAPN9 0.509 calpain 9 isoform 1 CAPN3 0.504 calpain 3 isoform b CAPN3 0.503 calpain 3 isoform a CAPN3 0.485 calpain 3 isoform f CAPN9 0.481 calpain 9 isoform 2 CAPN12 0.367 calpain 12 CAPN14 0.296 calpain 14 CAPN13 0.224 calpain 13 CAPN5 0.218 calpain 5 CAPN3 0.179 calpain 3 isoform d CAPN6 0.172 calpain 6 CAPN10 0.139 calpain 10 isoform a CAPN10 0.135 calpain 10 isoform c CAPNS2 0.119 calpain small subunit 2 CAPNS1 0.116 calpain, small subunit 1 CAPNS1 0.116 calpain, small subunit 1 CAPN3 0.115 calpain 3 isoform e CAPN3 0.115 calpain 3 isoform e SOLH 0.092 small optic lobes CAPN7 0.050 calpain 7 SRI 0.049 sorcin isoform b SRI 0.049 sorcin isoform a GCA 0.045 grancalcin, EF-hand calcium binding protein PEF1 0.036 penta-EF-hand domain containing 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.