CAPN6 3056

Name: CAPN6	Sequence: fasta or formatted (641aa)		NCBI GI: 13186316
Description: calpain 6		Referenced in: Cysteine Proteases
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.8 18 1 C cysteine 2.3 15 2 D aspartate 6.1 39 3 E glutamate 7.2 46 2 F phenylalanine 5.3 34 1 G glycine 5.9 38 2 H histidine 2.5 16 2 I isoleucine 5.1 33 2 K lysine 7.2 46 2 L leucine 10.0 64 2 M methionine 2.3 15 1 N asparagine 4.5 29 2 P proline 4.4 28 2 Q glutamine 4.5 29 2 R arginine 5.6 36 2 S serine 5.3 34 2 T threonine 6.6 42 2 V valine 6.6 42 2 W tryptophan 2.2 14 1 Y tyrosine 3.6 23 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain 6 CAPN5 0.439 calpain 5 CAPN3 0.220 calpain 3 isoform c CAPN9 0.207 calpain 9 isoform 1 CAPN2 0.206 calpain 2 isoform 1 CAPN3 0.205 calpain 3 isoform a CAPN3 0.205 calpain 3 isoform b CAPN8 0.203 calpain 8 CAPN1 0.187 calpain 1, large subunit CAPN11 0.186 calpain 11 CAPN2 0.183 calpain 2 isoform 2 CAPN9 0.178 calpain 9 isoform 2 CAPN3 0.173 calpain 3 isoform f CAPN14 0.156 calpain 14 CAPN12 0.156 calpain 12 CAPN10 0.119 calpain 10 isoform a CAPN13 0.116 calpain 13 CAPN10 0.099 calpain 10 isoform c CAPN7 0.059 calpain 7 SOLH 0.054 small optic lobes CAPN3 0.011 calpain 3 isoform d CAPN10 0.011 calpain 10 isoform g RAB11FIP2 0.009 RAB11 family interacting protein 2 (class I) UNC13C 0.009 unc-13 homolog C C6orf103 0.008 hypothetical protein LOC79747 UNC13A 0.005 unc-13 homolog A FAM129A 0.005 niban protein isoform 2 NPFFR2 0.004 neuropeptide FF receptor 2 isoform 1 PES1 0.004 pescadillo homolog 1, containing BRCT domain UNC13B 0.004 UNC13 (C. elegans)-like Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.