CAPN3 30390

Name: CAPN3	Sequence: fasta or formatted (728aa)		NCBI GI: 47078247
Description: calpain 3 isoform f		Referenced in: Cysteine Proteases
Other entries for this name: alt prot [815aa] calpain 3 isoform b alt prot [729aa] calpain 3 isoform c alt prot [309aa] calpain 3 isoform d alt prot [156aa] calpain 3 isoform e alt prot [156aa] calpain 3 isoform e alt prot [821aa] calpain 3 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 36 2 C cysteine 2.1 15 2 D aspartate 7.6 55 3 E glutamate 7.3 53 2 F phenylalanine 5.5 40 2 G glycine 6.2 45 2 H histidine 2.6 19 2 I isoleucine 5.6 41 2 K lysine 6.3 46 2 L leucine 7.7 56 2 M methionine 3.0 22 1 N asparagine 5.5 40 2 P proline 3.3 24 2 Q glutamine 5.1 37 3 R arginine 5.4 39 2 S serine 6.5 47 2 T threonine 5.1 37 2 V valine 5.1 37 2 W tryptophan 2.3 17 1 Y tyrosine 3.0 22 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain 3 isoform f CAPN3 0.978 calpain 3 isoform b CAPN3 0.974 calpain 3 isoform a CAPN3 0.835 calpain 3 isoform c CAPN9 0.474 calpain 9 isoform 1 CAPN1 0.465 calpain 1, large subunit CAPN9 0.451 calpain 9 isoform 2 CAPN2 0.438 calpain 2 isoform 1 CAPN2 0.437 calpain 2 isoform 2 CAPN11 0.418 calpain 11 CAPN8 0.398 calpain 8 CAPN3 0.397 calpain 3 isoform d CAPN12 0.289 calpain 12 CAPN14 0.258 calpain 14 CAPN5 0.205 calpain 5 CAPN3 0.204 calpain 3 isoform e CAPN3 0.204 calpain 3 isoform e CAPN13 0.174 calpain 13 CAPN6 0.152 calpain 6 CAPNS1 0.134 calpain, small subunit 1 CAPNS1 0.134 calpain, small subunit 1 CAPNS2 0.124 calpain small subunit 2 CAPN10 0.117 calpain 10 isoform a CAPN10 0.112 calpain 10 isoform c SOLH 0.080 small optic lobes SRI 0.052 sorcin isoform b SRI 0.052 sorcin isoform a GCA 0.048 grancalcin, EF-hand calcium binding protein PDCD6 0.038 programmed cell death 6 PEF1 0.034 penta-EF-hand domain containing 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.