Guide to the Human Genome
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Name: CAPN3 Sequence: fasta or formatted (728aa) NCBI GI: 47078247
Description:

calpain 3 isoform f

Referenced in:

Cysteine Proteases

Other entries for this name:
alt prot [815aa] calpain 3 isoform b
alt prot [729aa] calpain 3 isoform c
alt prot [309aa] calpain 3 isoform d
alt prot [156aa] calpain 3 isoform e
alt prot [156aa] calpain 3 isoform e
alt prot [821aa] calpain 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         36           2
 C cysteine            2.1         15           2
 D aspartate           7.6         55           3
 E glutamate           7.3         53           2
 F phenylalanine       5.5         40           2
 G glycine             6.2         45           2
 H histidine           2.6         19           2
 I isoleucine          5.6         41           2
 K lysine              6.3         46           2
 L leucine             7.7         56           2
 M methionine          3.0         22           1
 N asparagine          5.5         40           2
 P proline             3.3         24           2
 Q glutamine           5.1         37           3
 R arginine            5.4         39           2
 S serine              6.5         47           2
 T threonine           5.1         37           2
 V valine              5.1         37           2
 W tryptophan          2.3         17           1
 Y tyrosine            3.0         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 3 isoform f 
CAPN3                 0.978   calpain 3 isoform b 
CAPN3                 0.974   calpain 3 isoform a 
CAPN3                 0.835   calpain 3 isoform c 
CAPN9                 0.474   calpain 9 isoform 1 
CAPN1                 0.465   calpain 1, large subunit 
CAPN9                 0.451   calpain 9 isoform 2 
CAPN2                 0.438   calpain 2 isoform 1 
CAPN2                 0.437   calpain 2 isoform 2 
CAPN11                0.418   calpain 11 
CAPN8                 0.398   calpain 8 
CAPN3                 0.397   calpain 3 isoform d 
CAPN12                0.289   calpain 12 
CAPN14                0.258   calpain 14 
CAPN5                 0.205   calpain 5 
CAPN3                 0.204   calpain 3 isoform e 
CAPN3                 0.204   calpain 3 isoform e 
CAPN13                0.174   calpain 13 
CAPN6                 0.152   calpain 6 
CAPNS1                0.134   calpain, small subunit 1 
CAPNS1                0.134   calpain, small subunit 1 
CAPNS2                0.124   calpain small subunit 2 
CAPN10                0.117   calpain 10 isoform a 
CAPN10                0.112   calpain 10 isoform c 
SOLH                  0.080   small optic lobes 
SRI                   0.052   sorcin isoform b 
SRI                   0.052   sorcin isoform a 
GCA                   0.048   grancalcin, EF-hand calcium binding protein 
PDCD6                 0.038   programmed cell death 6 
PEF1                  0.034   penta-EF-hand domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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