CAPN3 24521

Name: CAPN3	Sequence: fasta or formatted (309aa)		NCBI GI: 27765076
Description: calpain 3 isoform d		Referenced in: Cysteine Proteases
Other entries for this name: alt prot [815aa] calpain 3 isoform b alt prot [729aa] calpain 3 isoform c alt prot [156aa] calpain 3 isoform e alt prot [156aa] calpain 3 isoform e alt prot [821aa] calpain 3 isoform a alt prot [728aa] calpain 3 isoform f
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.2 13 1 C cysteine 1.3 4 2 D aspartate 7.1 22 2 E glutamate 7.4 23 2 F phenylalanine 5.8 18 2 G glycine 4.9 15 1 H histidine 3.6 11 2 I isoleucine 6.1 19 2 K lysine 9.4 29 4 L leucine 6.8 21 1 M methionine 3.2 10 1 N asparagine 6.1 19 2 P proline 3.2 10 2 Q glutamine 6.1 19 3 R arginine 4.5 14 1 S serine 7.1 22 2 T threonine 4.2 13 1 V valine 4.9 15 2 W tryptophan 1.0 3 1 Y tyrosine 2.9 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain 3 isoform d CAPN3 1.000 calpain 3 isoform a CAPN3 0.969 calpain 3 isoform f CAPN3 0.969 calpain 3 isoform b CAPN3 0.823 calpain 3 isoform c CAPN3 0.499 calpain 3 isoform e CAPN3 0.499 calpain 3 isoform e CAPN1 0.420 calpain 1, large subunit CAPN9 0.402 calpain 9 isoform 2 CAPN9 0.402 calpain 9 isoform 1 CAPN2 0.343 calpain 2 isoform 1 CAPN2 0.343 calpain 2 isoform 2 CAPN11 0.328 calpain 11 CAPNS1 0.327 calpain, small subunit 1 CAPNS1 0.327 calpain, small subunit 1 CAPN8 0.325 calpain 8 CAPNS2 0.304 calpain small subunit 2 CAPN12 0.181 calpain 12 CAPN14 0.166 calpain 14 SRI 0.126 sorcin isoform b SRI 0.126 sorcin isoform a GCA 0.118 grancalcin, EF-hand calcium binding protein CAPN13 0.117 calpain 13 PDCD6 0.092 programmed cell death 6 PEF1 0.084 penta-EF-hand domain containing 1 CAPN5 0.043 calpain 5 CALML5 0.039 calmodulin-like 5 CALM3 0.028 calmodulin 3 CALM2 0.028 calmodulin 2 CALM1 0.028 calmodulin 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.