Guide to the Human Genome
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Name: CAPN3 Sequence: fasta or formatted (309aa) NCBI GI: 27765076
Description:

calpain 3 isoform d

Referenced in:

Cysteine Proteases

Other entries for this name:
alt prot [815aa] calpain 3 isoform b
alt prot [729aa] calpain 3 isoform c
alt prot [156aa] calpain 3 isoform e
alt prot [156aa] calpain 3 isoform e
alt prot [821aa] calpain 3 isoform a
alt prot [728aa] calpain 3 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         13           1
 C cysteine            1.3          4           2
 D aspartate           7.1         22           2
 E glutamate           7.4         23           2
 F phenylalanine       5.8         18           2
 G glycine             4.9         15           1
 H histidine           3.6         11           2
 I isoleucine          6.1         19           2
 K lysine              9.4         29           4
 L leucine             6.8         21           1
 M methionine          3.2         10           1
 N asparagine          6.1         19           2
 P proline             3.2         10           2
 Q glutamine           6.1         19           3
 R arginine            4.5         14           1
 S serine              7.1         22           2
 T threonine           4.2         13           1
 V valine              4.9         15           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 3 isoform d 
CAPN3                 1.000   calpain 3 isoform a 
CAPN3                 0.969   calpain 3 isoform f 
CAPN3                 0.969   calpain 3 isoform b 
CAPN3                 0.823   calpain 3 isoform c 
CAPN3                 0.499   calpain 3 isoform e 
CAPN3                 0.499   calpain 3 isoform e 
CAPN1                 0.420   calpain 1, large subunit 
CAPN9                 0.402   calpain 9 isoform 2 
CAPN9                 0.402   calpain 9 isoform 1 
CAPN2                 0.343   calpain 2 isoform 1 
CAPN2                 0.343   calpain 2 isoform 2 
CAPN11                0.328   calpain 11 
CAPNS1                0.327   calpain, small subunit 1 
CAPNS1                0.327   calpain, small subunit 1 
CAPN8                 0.325   calpain 8 
CAPNS2                0.304   calpain small subunit 2 
CAPN12                0.181   calpain 12 
CAPN14                0.166   calpain 14 
SRI                   0.126   sorcin isoform b 
SRI                   0.126   sorcin isoform a 
GCA                   0.118   grancalcin, EF-hand calcium binding protein 
CAPN13                0.117   calpain 13 
PDCD6                 0.092   programmed cell death 6 
PEF1                  0.084   penta-EF-hand domain containing 1 
CAPN5                 0.043   calpain 5 
CALML5                0.039   calmodulin-like 5 
CALM3                 0.028   calmodulin 3 
CALM2                 0.028   calmodulin 2 
CALM1                 0.028   calmodulin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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