Guide to the Human Genome
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Name: CAPN7 Sequence: fasta or formatted (813aa) NCBI GI: 7656959
Description:

calpain 7

Referenced in:

Cysteine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         49           2
 C cysteine            1.6         13           1
 D aspartate           5.3         43           2
 E glutamate           6.2         50           2
 F phenylalanine       4.7         38           2
 G glycine             5.5         45           2
 H histidine           2.5         20           1
 I isoleucine          6.2         50           2
 K lysine              7.1         58           2
 L leucine             8.2         67           2
 M methionine          1.6         13           2
 N asparagine          4.4         36           2
 P proline             6.3         51           3
 Q glutamine           4.7         38           1
 R arginine            4.4         36           2
 S serine              7.4         60           2
 T threonine           5.8         47           2
 V valine              5.5         45           2
 W tryptophan          1.7         14           1
 Y tyrosine            4.9         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 7 
CAPN5                 0.056   calpain 5 
SOLH                  0.052   small optic lobes 
CAPN6                 0.047   calpain 6 
CAPN13                0.045   calpain 13 
CAPN14                0.044   calpain 14 
CAPN1                 0.043   calpain 1, large subunit 
CAPN2                 0.042   calpain 2 isoform 1 
CAPN10                0.042   calpain 10 isoform a 
CAPN8                 0.041   calpain 8 
CAPN11                0.041   calpain 11 
CAPN3                 0.041   calpain 3 isoform c 
CAPN9                 0.041   calpain 9 isoform 1 
CAPN12                0.039   calpain 12 
CAPN2                 0.037   calpain 2 isoform 2 
CAPN9                 0.035   calpain 9 isoform 2 
CAPN3                 0.032   calpain 3 isoform a 
CAPN3                 0.032   calpain 3 isoform b 
CAPN3                 0.029   calpain 3 isoform f 
CAPN10                0.029   calpain 10 isoform c 
C6orf103              0.029   hypothetical protein LOC79747 
VPS4A                 0.011   vacuolar protein sorting factor 4A 
VPS4B                 0.010   vacuolar protein sorting factor 4B 
RPS6KC1               0.007   ribosomal protein S6 kinase, 52kDa, polypeptide 1 i...
RPS6KC1               0.007   ribosomal protein S6 kinase, 52kDa, polypeptide 1 is...
OFD1                  0.006   oral-facial-digital syndrome 1 
MITD1                 0.005   MIT, microtubule interacting and transport, domain c...
ULK3                  0.005   unc-51-like kinase 3 
TRPM4                 0.005   transient receptor potential cation channel, subfami...
DST                   0.005   dystonin isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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