Guide to the Human Genome
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Name: CAPN3 Sequence: fasta or formatted (815aa) NCBI GI: 27765072
Description:

calpain 3 isoform b

Referenced in:

Cysteine Proteases

Other entries for this name:
alt prot [729aa] calpain 3 isoform c
alt prot [309aa] calpain 3 isoform d
alt prot [156aa] calpain 3 isoform e
alt prot [156aa] calpain 3 isoform e
alt prot [821aa] calpain 3 isoform a
alt prot [728aa] calpain 3 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         44           2
 C cysteine            2.0         16           2
 D aspartate           7.0         57           3
 E glutamate           7.4         60           2
 F phenylalanine       5.6         46           2
 G glycine             6.3         51           3
 H histidine           2.6         21           2
 I isoleucine          5.8         47           2
 K lysine              6.5         53           2
 L leucine             7.2         59           2
 M methionine          2.7         22           1
 N asparagine          5.0         41           2
 P proline             4.8         39           2
 Q glutamine           4.5         37           3
 R arginine            5.3         43           2
 S serine              6.6         54           2
 T threonine           4.8         39           2
 V valine              5.4         44           2
 W tryptophan          2.1         17           1
 Y tyrosine            3.1         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 3 isoform b 
CAPN3                 0.996   calpain 3 isoform a 
CAPN3                 0.873   calpain 3 isoform f 
CAPN3                 0.872   calpain 3 isoform c 
CAPN9                 0.453   calpain 9 isoform 1 
CAPN9                 0.432   calpain 9 isoform 2 
CAPN1                 0.432   calpain 1, large subunit 
CAPN2                 0.406   calpain 2 isoform 1 
CAPN2                 0.390   calpain 2 isoform 2 
CAPN11                0.390   calpain 11 
CAPN8                 0.375   calpain 8 
CAPN3                 0.354   calpain 3 isoform d 
CAPN12                0.272   calpain 12 
CAPN14                0.253   calpain 14 
CAPN5                 0.202   calpain 5 
CAPN3                 0.182   calpain 3 isoform e 
CAPN3                 0.182   calpain 3 isoform e 
CAPN13                0.167   calpain 13 
CAPN6                 0.161   calpain 6 
CAPNS1                0.119   calpain, small subunit 1 
CAPNS1                0.119   calpain, small subunit 1 
CAPN10                0.114   calpain 10 isoform a 
CAPNS2                0.111   calpain small subunit 2 
CAPN10                0.110   calpain 10 isoform c 
SOLH                  0.079   small optic lobes 
SRI                   0.046   sorcin isoform b 
SRI                   0.046   sorcin isoform a 
GCA                   0.043   grancalcin, EF-hand calcium binding protein 
PDCD6                 0.034   programmed cell death 6 
CAPN7                 0.032   calpain 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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