CAPN3 24519

Name: CAPN3	Sequence: fasta or formatted (815aa)		NCBI GI: 27765072
Description: calpain 3 isoform b		Referenced in: Cysteine Proteases
Other entries for this name: alt prot [729aa] calpain 3 isoform c alt prot [309aa] calpain 3 isoform d alt prot [156aa] calpain 3 isoform e alt prot [156aa] calpain 3 isoform e alt prot [821aa] calpain 3 isoform a alt prot [728aa] calpain 3 isoform f
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 44 2 C cysteine 2.0 16 2 D aspartate 7.0 57 3 E glutamate 7.4 60 2 F phenylalanine 5.6 46 2 G glycine 6.3 51 3 H histidine 2.6 21 2 I isoleucine 5.8 47 2 K lysine 6.5 53 2 L leucine 7.2 59 2 M methionine 2.7 22 1 N asparagine 5.0 41 2 P proline 4.8 39 2 Q glutamine 4.5 37 3 R arginine 5.3 43 2 S serine 6.6 54 2 T threonine 4.8 39 2 V valine 5.4 44 2 W tryptophan 2.1 17 1 Y tyrosine 3.1 25 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain 3 isoform b CAPN3 0.996 calpain 3 isoform a CAPN3 0.873 calpain 3 isoform f CAPN3 0.872 calpain 3 isoform c CAPN9 0.453 calpain 9 isoform 1 CAPN9 0.432 calpain 9 isoform 2 CAPN1 0.432 calpain 1, large subunit CAPN2 0.406 calpain 2 isoform 1 CAPN2 0.390 calpain 2 isoform 2 CAPN11 0.390 calpain 11 CAPN8 0.375 calpain 8 CAPN3 0.354 calpain 3 isoform d CAPN12 0.272 calpain 12 CAPN14 0.253 calpain 14 CAPN5 0.202 calpain 5 CAPN3 0.182 calpain 3 isoform e CAPN3 0.182 calpain 3 isoform e CAPN13 0.167 calpain 13 CAPN6 0.161 calpain 6 CAPNS1 0.119 calpain, small subunit 1 CAPNS1 0.119 calpain, small subunit 1 CAPN10 0.114 calpain 10 isoform a CAPNS2 0.111 calpain small subunit 2 CAPN10 0.110 calpain 10 isoform c SOLH 0.079 small optic lobes SRI 0.046 sorcin isoform b SRI 0.046 sorcin isoform a GCA 0.043 grancalcin, EF-hand calcium binding protein PDCD6 0.034 programmed cell death 6 CAPN7 0.032 calpain 7 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.