Guide to the Human Genome
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Name: CAPN2 Sequence: fasta or formatted (622aa) NCBI GI: 225703100
Description:

calpain 2 isoform 2

Referenced in:

Cysteine Proteases

Other entries for this name:
alt prot [700aa] calpain 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         35           2
 C cysteine            2.3         14           1
 D aspartate           7.2         45           2
 E glutamate           9.6         60           3
 F phenylalanine       5.9         37           2
 G glycine             7.1         44           2
 H histidine           1.4          9           1
 I isoleucine          7.1         44           2
 K lysine              5.6         35           2
 L leucine             9.5         59           2
 M methionine          1.8         11           1
 N asparagine          4.0         25           1
 P proline             3.1         19           3
 Q glutamine           3.9         24           1
 R arginine            5.8         36           3
 S serine              5.6         35           1
 T threonine           5.3         33           2
 V valine              4.0         25           3
 W tryptophan          2.4         15           1
 Y tyrosine            2.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 2 isoform 2 
CAPN2                 0.998   calpain 2 isoform 1 
CAPN1                 0.661   calpain 1, large subunit 
CAPN8                 0.634   calpain 8 
CAPN3                 0.547   calpain 3 isoform c 
CAPN11                0.545   calpain 11 
CAPN9                 0.530   calpain 9 isoform 1 
CAPN3                 0.519   calpain 3 isoform f 
CAPN3                 0.519   calpain 3 isoform b 
CAPN3                 0.517   calpain 3 isoform a 
CAPN9                 0.500   calpain 9 isoform 2 
CAPN12                0.369   calpain 12 
CAPN14                0.320   calpain 14 
CAPN5                 0.226   calpain 5 
CAPN13                0.200   calpain 13 
CAPN6                 0.191   calpain 6 
CAPN3                 0.167   calpain 3 isoform d 
CAPN10                0.138   calpain 10 isoform a 
CAPN10                0.130   calpain 10 isoform c 
CAPNS1                0.124   calpain, small subunit 1 
CAPNS1                0.124   calpain, small subunit 1 
CAPNS2                0.116   calpain small subunit 2 
CAPN3                 0.107   calpain 3 isoform e 
CAPN3                 0.107   calpain 3 isoform e 
SOLH                  0.090   small optic lobes 
SRI                   0.055   sorcin isoform b 
SRI                   0.055   sorcin isoform a 
GCA                   0.053   grancalcin, EF-hand calcium binding protein 
CAPN7                 0.049   calpain 7 
PEF1                  0.040   penta-EF-hand domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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