Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CAPN14 Sequence: fasta or formatted (684aa) NCBI GI: 223468608
Description:

calpain 14

Referenced in:

Cysteine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         34           2
 C cysteine            2.0         14           1
 D aspartate           4.2         29           2
 E glutamate           6.6         45           2
 F phenylalanine       5.6         38           2
 G glycine             6.0         41           2
 H histidine           2.3         16           1
 I isoleucine          3.8         26           1
 K lysine              6.0         41           1
 L leucine            13.2         90           3
 M methionine          2.3         16           3
 N asparagine          3.5         24           1
 P proline             4.8         33           2
 Q glutamine           6.6         45           2
 R arginine            6.4         44           2
 S serine              6.9         47           3
 T threonine           3.8         26           1
 V valine              4.8         33           2
 W tryptophan          3.2         22           1
 Y tyrosine            2.9         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 14 
CAPN3                 0.324   calpain 3 isoform c 
CAPN9                 0.319   calpain 9 isoform 1 
CAPN2                 0.317   calpain 2 isoform 1 
CAPN11                0.313   calpain 11 
CAPN8                 0.311   calpain 8 
CAPN1                 0.304   calpain 1, large subunit 
CAPN3                 0.303   calpain 3 isoform b 
CAPN3                 0.301   calpain 3 isoform a 
CAPN9                 0.295   calpain 9 isoform 2 
CAPN2                 0.288   calpain 2 isoform 2 
CAPN3                 0.282   calpain 3 isoform f 
CAPN12                0.258   calpain 12 
CAPN13                0.245   calpain 13 
CAPN5                 0.173   calpain 5 
CAPN6                 0.147   calpain 6 
CAPN10                0.114   calpain 10 isoform a 
CAPN10                0.110   calpain 10 isoform c 
SOLH                  0.094   small optic lobes 
CAPN3                 0.073   calpain 3 isoform d 
CAPN7                 0.052   calpain 7 
CAPNS2                0.050   calpain small subunit 2 
CAPN3                 0.050   calpain 3 isoform e 
CAPN3                 0.050   calpain 3 isoform e 
CAPNS1                0.043   calpain, small subunit 1 
CAPNS1                0.043   calpain, small subunit 1 
GCA                   0.022   grancalcin, EF-hand calcium binding protein 
PEF1                  0.020   penta-EF-hand domain containing 1 
CAPN10                0.019   calpain 10 isoform g 
SRI                   0.019   sorcin isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press