Guide to the Human Genome
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Name: CAPN13 Sequence: fasta or formatted (669aa) NCBI GI: 41152101
Description:

calpain 13

Referenced in:

Cysteine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         36           2
 C cysteine            1.8         12           1
 D aspartate           5.5         37           2
 E glutamate           5.5         37           2
 F phenylalanine       6.3         42           2
 G glycine             6.4         43           2
 H histidine           2.7         18           1
 I isoleucine          4.3         29           2
 K lysine              4.8         32           2
 L leucine            10.2         68           2
 M methionine          2.7         18           1
 N asparagine          3.6         24           2
 P proline             4.3         29           2
 Q glutamine           6.6         44           2
 R arginine            6.1         41           2
 S serine              7.8         52           2
 T threonine           5.1         34           2
 V valine              6.0         40           3
 W tryptophan          2.5         17           1
 Y tyrosine            2.4         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 13 
CAPN14                0.252   calpain 14 
CAPN1                 0.237   calpain 1, large subunit 
CAPN11                0.233   calpain 11 
CAPN8                 0.227   calpain 8 
CAPN3                 0.226   calpain 3 isoform c 
CAPN2                 0.212   calpain 2 isoform 1 
CAPN9                 0.210   calpain 9 isoform 1 
CAPN3                 0.206   calpain 3 isoform b 
CAPN3                 0.204   calpain 3 isoform a 
CAPN3                 0.192   calpain 3 isoform f 
CAPN9                 0.186   calpain 9 isoform 2 
CAPN2                 0.185   calpain 2 isoform 2 
CAPN12                0.180   calpain 12 
CAPN5                 0.130   calpain 5 
CAPN6                 0.113   calpain 6 
CAPN10                0.096   calpain 10 isoform a 
CAPN10                0.091   calpain 10 isoform c 
SOLH                  0.070   small optic lobes 
CAPNS1                0.057   calpain, small subunit 1 
CAPNS1                0.057   calpain, small subunit 1 
CAPN7                 0.055   calpain 7 
CAPN3                 0.053   calpain 3 isoform d 
CAPN3                 0.049   calpain 3 isoform e 
CAPN3                 0.049   calpain 3 isoform e 
CAPNS2                0.046   calpain small subunit 2 
GCA                   0.023   grancalcin, EF-hand calcium binding protein 
SRI                   0.021   sorcin isoform b 
SRI                   0.021   sorcin isoform a 
CAPN10                0.017   calpain 10 isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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