Guide to the Human Genome
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Name: CAPN9 Sequence: fasta or formatted (664aa) NCBI GI: 7705383
Description:

calpain 9 isoform 2

Referenced in:

Stomach, Small Intestine, and Colon
Cysteine Proteases

Other entries for this name:
alt prot [690aa] calpain 9 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         49           2
 C cysteine            1.7         11           1
 D aspartate           6.5         43           2
 E glutamate           8.4         56           3
 F phenylalanine       7.1         47           2
 G glycine             5.7         38           2
 H histidine           2.4         16           1
 I isoleucine          5.7         38           2
 K lysine              6.3         42           3
 L leucine             9.9         66           2
 M methionine          1.5         10           1
 N asparagine          3.8         25           1
 P proline             4.4         29           2
 Q glutamine           4.5         30           1
 R arginine            5.7         38           2
 S serine              6.0         40           2
 T threonine           4.7         31           1
 V valine              4.1         27           2
 W tryptophan          2.0         13           1
 Y tyrosine            2.3         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calpain 9 isoform 2 
CAPN9                 0.987   calpain 9 isoform 1 
CAPN3                 0.566   calpain 3 isoform c 
CAPN3                 0.541   calpain 3 isoform b 
CAPN3                 0.538   calpain 3 isoform a 
CAPN1                 0.516   calpain 1, large subunit 
CAPN3                 0.503   calpain 3 isoform f 
CAPN2                 0.497   calpain 2 isoform 1 
CAPN8                 0.495   calpain 8 
CAPN2                 0.470   calpain 2 isoform 2 
CAPN11                0.453   calpain 11 
CAPN12                0.323   calpain 12 
CAPN14                0.308   calpain 14 
CAPN5                 0.218   calpain 5 
CAPN13                0.188   calpain 13 
CAPN3                 0.184   calpain 3 isoform d 
CAPN6                 0.175   calpain 6 
CAPN10                0.112   calpain 10 isoform a 
CAPN10                0.107   calpain 10 isoform c 
CAPNS2                0.106   calpain small subunit 2 
CAPNS1                0.105   calpain, small subunit 1 
CAPNS1                0.105   calpain, small subunit 1 
CAPN3                 0.094   calpain 3 isoform e 
CAPN3                 0.094   calpain 3 isoform e 
SOLH                  0.076   small optic lobes 
SRI                   0.052   sorcin isoform b 
SRI                   0.052   sorcin isoform a 
GCA                   0.048   grancalcin, EF-hand calcium binding protein 
CAPN7                 0.043   calpain 7 
PEF1                  0.037   penta-EF-hand domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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