COL6A3 32818

Name: COL6A3	Sequence: fasta or formatted (3177aa)		NCBI GI: 55743098
Description: alpha 3 type VI collagen isoform 1 precursor		Referenced in: Collagen
Other entries for this name: alt prot [2570aa] alpha 3 type VI collagen isoform 4 precursor alt prot [1237aa] alpha 3 type VI collagen isoform 3 precursor alt prot [1036aa] alpha 3 type VI collagen isoform 2 precursor alt prot [2971aa] alpha 3 type VI collagen isoform 5 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 235 5 C cysteine 0.9 30 2 D aspartate 5.8 183 2 E glutamate 5.8 183 2 F phenylalanine 4.7 149 2 G glycine 9.5 303 2 H histidine 1.4 45 1 I isoleucine 4.8 153 2 K lysine 5.0 158 3 L leucine 8.9 282 5 M methionine 1.2 37 1 N asparagine 4.1 130 2 P proline 6.6 209 4 Q glutamine 4.6 147 4 R arginine 5.9 189 2 S serine 6.8 217 3 T threonine 5.3 167 4 V valine 9.2 292 3 W tryptophan 0.2 6 1 Y tyrosine 2.0 62 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.925 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.765 alpha 3 type VI collagen isoform 4 precursor COL6A3 0.362 alpha 3 type VI collagen isoform 3 precursor COL6A3 0.301 alpha 3 type VI collagen isoform 2 precursor COL6A6 0.179 collagen type VI alpha 6 COL29A1 0.161 collagen, type XXIX, alpha 1 COL22A1 0.050 collagen, type XXII, alpha 1 COL6A1 0.050 collagen, type VI, alpha 1 precursor COL6A2 0.048 alpha 2 type VI collagen isoform 2C2 precursor [Hom... COL6A2 0.047 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.047 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL1A1 0.045 alpha 1 type I collagen preproprotein COL28A1 0.044 collagen, type XXVIII precursor COL5A1 0.044 alpha 1 type V collagen preproprotein COL27A1 0.043 collagen, type XXVII, alpha 1 COL2A1 0.043 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.043 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A1 0.042 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.042 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.042 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A2 0.042 alpha 2 type V collagen preproprotein COL3A1 0.042 collagen type III alpha 1 preproprotein COL5A3 0.042 collagen, type V, alpha 3 preproprotein COL11A2 0.041 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.041 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.041 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL1A2 0.041 alpha 2 type I collagen COL7A1 0.040 alpha 1 type VII collagen precursor COL16A1 0.040 alpha 1 type XVI collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.