COL6A2 1583

Name: COL6A2	Sequence: fasta or formatted (828aa)		NCBI GI: 115527070
Description: alpha 2 type VI collagen isoform 2C2a' precursor		Referenced in: Collagen
Other entries for this name: alt prot [1019aa] alpha 2 type VI collagen isoform 2C2 precursor alt prot [918aa] alpha 2 type VI collagen isoform 2C2a precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 42 1 C cysteine 2.4 20 2 D aspartate 7.0 58 3 E glutamate 6.6 55 2 F phenylalanine 3.3 27 1 G glycine 17.3 143 2 H histidine 1.3 11 1 I isoleucine 4.3 36 2 K lysine 6.0 50 1 L leucine 5.6 46 3 M methionine 1.3 11 1 N asparagine 2.8 23 3 P proline 9.9 82 2 Q glutamine 4.2 35 3 R arginine 6.2 51 2 S serine 5.0 41 2 T threonine 4.2 35 2 V valine 5.1 42 2 W tryptophan 0.5 4 1 Y tyrosine 1.9 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.991 alpha 2 type VI collagen isoform 2C2 precursor [Hom... COL6A2 0.990 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL6A1 0.303 collagen, type VI, alpha 1 precursor COL28A1 0.194 collagen, type XXVIII precursor COL5A1 0.182 alpha 1 type V collagen preproprotein COL1A1 0.174 alpha 1 type I collagen preproprotein COL11A2 0.173 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.173 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.173 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL2A1 0.172 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.172 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A1 0.171 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.171 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.171 alpha 1 type XI collagen isoform A preproprotein [Ho... COL7A1 0.170 alpha 1 type VII collagen precursor COL6A3 0.170 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.170 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.170 alpha 3 type VI collagen isoform 4 precursor COL3A1 0.170 collagen type III alpha 1 preproprotein COL9A1 0.168 alpha 1 type IX collagen isoform 1 precursor COL5A3 0.166 collagen, type V, alpha 3 preproprotein COL5A2 0.165 alpha 2 type V collagen preproprotein COL9A1 0.165 alpha 1 type IX collagen isoform 2 precursor COL10A1 0.162 type X collagen alpha 1 precursor COL29A1 0.161 collagen, type XXIX, alpha 1 COL16A1 0.161 alpha 1 type XVI collagen precursor COL4A5 0.161 type IV collagen alpha 5 isoform 1 precursor COL27A1 0.160 collagen, type XXVII, alpha 1 LOC100293055 0.160 PREDICTED: similar to COL22A1 protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.