COL6A2 1580

Name: COL6A2	Sequence: fasta or formatted (1019aa)		NCBI GI: 115527062
Description: alpha 2 type VI collagen isoform 2C2 precursor		Referenced in: Collagen
Other entries for this name: alt prot [918aa] alpha 2 type VI collagen isoform 2C2a precursor alt prot [828aa] alpha 2 type VI collagen isoform 2C2a' precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 60 2 C cysteine 2.1 21 2 D aspartate 7.0 71 3 E glutamate 6.4 65 2 F phenylalanine 3.8 39 2 G glycine 15.2 155 2 H histidine 2.0 20 1 I isoleucine 4.1 42 2 K lysine 5.2 53 1 L leucine 6.5 66 3 M methionine 1.3 13 1 N asparagine 2.9 30 3 P proline 8.7 89 2 Q glutamine 4.4 45 3 R arginine 6.7 68 2 S serine 5.3 54 2 T threonine 4.4 45 2 V valine 5.9 60 2 W tryptophan 0.5 5 1 Y tyrosine 1.8 18 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 2 type VI collagen isoform 2C2 precursor [Hom... COL6A2 0.813 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.812 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL6A1 0.274 collagen, type VI, alpha 1 precursor COL28A1 0.159 collagen, type XXVIII precursor COL5A1 0.149 alpha 1 type V collagen preproprotein COL6A3 0.143 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.143 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.143 alpha 3 type VI collagen isoform 4 precursor COL1A1 0.143 alpha 1 type I collagen preproprotein COL11A2 0.142 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.142 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.142 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL2A1 0.141 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.141 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A1 0.140 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.140 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.140 alpha 1 type XI collagen isoform A preproprotein [Ho... COL7A1 0.140 alpha 1 type VII collagen precursor COL3A1 0.139 collagen type III alpha 1 preproprotein COL9A1 0.137 alpha 1 type IX collagen isoform 1 precursor COL5A3 0.136 collagen, type V, alpha 3 preproprotein COL29A1 0.136 collagen, type XXIX, alpha 1 COL5A2 0.135 alpha 2 type V collagen preproprotein COL9A1 0.135 alpha 1 type IX collagen isoform 2 precursor COL10A1 0.133 type X collagen alpha 1 precursor COL16A1 0.132 alpha 1 type XVI collagen precursor COL4A5 0.132 type IV collagen alpha 5 isoform 1 precursor COL27A1 0.131 collagen, type XXVII, alpha 1 LOC100293055 0.131 PREDICTED: similar to COL22A1 protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.