COL6A1 36637

Name: COL6A1	Sequence: fasta or formatted (1028aa)		NCBI GI: 87196339
Description: collagen, type VI, alpha 1 precursor		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 77 2 C cysteine 1.9 20 2 D aspartate 6.9 71 2 E glutamate 6.6 68 2 F phenylalanine 3.2 33 2 G glycine 15.2 156 2 H histidine 1.4 14 1 I isoleucine 4.1 42 2 K lysine 5.3 54 2 L leucine 6.9 71 3 M methionine 1.1 11 1 N asparagine 2.7 28 2 P proline 8.7 89 2 Q glutamine 4.1 42 2 R arginine 5.8 60 2 S serine 5.3 54 2 T threonine 4.0 41 2 V valine 6.3 65 4 W tryptophan 0.4 4 1 Y tyrosine 2.7 28 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type VI, alpha 1 precursor COL6A2 0.274 alpha 2 type VI collagen isoform 2C2 precursor [Hom... COL6A2 0.248 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.248 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL6A3 0.148 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.148 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.148 alpha 3 type VI collagen isoform 4 precursor COL28A1 0.147 collagen, type XXVIII precursor COL3A1 0.137 collagen type III alpha 1 preproprotein COL5A1 0.136 alpha 1 type V collagen preproprotein COL2A1 0.135 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.135 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL1A1 0.135 alpha 1 type I collagen preproprotein COL5A2 0.134 alpha 2 type V collagen preproprotein COL11A2 0.134 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.134 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.134 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A1 0.133 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.133 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.133 alpha 1 type XI collagen isoform A preproprotein [Ho... COL27A1 0.132 collagen, type XXVII, alpha 1 LOC100293055 0.131 PREDICTED: similar to COL22A1 protein COL22A1 0.131 collagen, type XXII, alpha 1 COL4A4 0.131 alpha 4 type IV collagen precursor COL5A3 0.130 collagen, type V, alpha 3 preproprotein COL4A5 0.130 type IV collagen alpha 5 isoform 3 precursor COL24A1 0.130 collagen, type XXIV, alpha 1 COL10A1 0.129 type X collagen alpha 1 precursor COL4A5 0.128 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.127 type IV collagen alpha 5 isoform 2 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.