Guide to the Human Genome
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Name: COL29A1 Sequence: fasta or formatted (2526aa) NCBI GI: 183583553
Description:

collagen, type XXIX, alpha 1

Referenced in:

Collagen

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2        132           2
 C cysteine            1.4         36           3
 D aspartate           6.2        156           2
 E glutamate           5.6        142           2
 F phenylalanine       5.1        129           2
 G glycine             9.5        240           2
 H histidine           2.2         55           2
 I isoleucine          6.2        157           2
 K lysine              6.7        170           2
 L leucine             8.3        210           2
 M methionine          2.1         52           2
 N asparagine          5.0        127           3
 P proline             4.2        107           3
 Q glutamine           5.5        138           3
 R arginine            4.9        124           2
 S serine              7.2        182           3
 T threonine           5.1        130           2
 V valine              6.2        157           2
 W tryptophan          0.5         13           1
 Y tyrosine            2.7         69           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   collagen, type XXIX, alpha 1 
COL6A6                0.445   collagen type VI alpha 6 
COL6A3                0.199   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.199   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.191   alpha 3 type VI collagen isoform 4 precursor 
COL6A3                0.073   alpha 3 type VI collagen isoform 3 precursor 
COL6A3                0.061   alpha 3 type VI collagen isoform 2 precursor 
COL6A2                0.056   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
COL21A1               0.055   collagen, type XXI, alpha 1 precursor 
COL6A2                0.055   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.055   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A1                0.051   collagen, type VI, alpha 1 precursor 
COL4A5                0.050   type IV collagen alpha 5 isoform 2 precursor 
COL5A3                0.049   collagen, type V, alpha 3 preproprotein 
COL9A1                0.049   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.049   alpha 1 type IX collagen isoform 2 precursor 
COL27A1               0.049   collagen, type XXVII, alpha 1 
COL11A1               0.049   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.049   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.049   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL4A5                0.049   type IV collagen alpha 5 isoform 3 precursor 
COL5A1                0.049   alpha 1 type V collagen preproprotein 
COL11A2               0.049   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.049   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.049   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL2A1                0.048   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.048   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL4A5                0.048   type IV collagen alpha 5 isoform 1 precursor 
COL9A2                0.048   alpha 2 type IX collagen 
COL28A1               0.048   collagen, type XXVIII precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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