Guide to the Human Genome
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Name: COL6A3 Sequence: fasta or formatted (2971aa) NCBI GI: 55743106
Description:

alpha 3 type VI collagen isoform 5 precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [2570aa] alpha 3 type VI collagen isoform 4 precursor
alt prot [1237aa] alpha 3 type VI collagen isoform 3 precursor
alt prot [1036aa] alpha 3 type VI collagen isoform 2 precursor
alt prot [3177aa] alpha 3 type VI collagen isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4        219           5
 C cysteine            1.0         29           2
 D aspartate           5.7        169           2
 E glutamate           5.7        168           2
 F phenylalanine       4.7        139           2
 G glycine             9.6        286           2
 H histidine           1.2         36           1
 I isoleucine          4.8        142           2
 K lysine              5.0        149           3
 L leucine             8.8        262           5
 M methionine          1.1         33           1
 N asparagine          4.0        118           2
 P proline             6.9        204           4
 Q glutamine           4.7        141           4
 R arginine            6.2        185           2
 S serine              6.7        200           3
 T threonine           5.2        155           4
 V valine              9.2        273           3
 W tryptophan          0.2          5           1
 Y tyrosine            2.0         58           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.989   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.818   alpha 3 type VI collagen isoform 4 precursor 
COL6A3                0.398   alpha 3 type VI collagen isoform 3 precursor 
COL6A3                0.322   alpha 3 type VI collagen isoform 2 precursor 
COL6A6                0.191   collagen type VI alpha 6 
COL29A1               0.172   collagen, type XXIX, alpha 1 
COL22A1               0.053   collagen, type XXII, alpha 1 
COL6A1                0.053   collagen, type VI, alpha 1 precursor 
COL6A2                0.051   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
COL6A2                0.050   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.050   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL1A1                0.048   alpha 1 type I collagen preproprotein 
COL28A1               0.047   collagen, type XXVIII precursor 
COL5A1                0.047   alpha 1 type V collagen preproprotein 
COL27A1               0.046   collagen, type XXVII, alpha 1 
COL2A1                0.046   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.046   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A1               0.045   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.045   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.045   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A2                0.045   alpha 2 type V collagen preproprotein 
COL3A1                0.045   collagen type III alpha 1 preproprotein 
COL5A3                0.044   collagen, type V, alpha 3 preproprotein 
COL11A2               0.044   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.044   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.044   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL1A2                0.044   alpha 2 type I collagen 
COL7A1                0.043   alpha 1 type VII collagen precursor 
COL16A1               0.043   alpha 1 type XVI collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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