COL6A3 23569

Name: COL6A3	Sequence: fasta or formatted (2570aa)		NCBI GI: 240255535
Description: alpha 3 type VI collagen isoform 4 precursor		Referenced in: Collagen
Other entries for this name: alt prot [1237aa] alpha 3 type VI collagen isoform 3 precursor alt prot [1036aa] alpha 3 type VI collagen isoform 2 precursor alt prot [3177aa] alpha 3 type VI collagen isoform 1 precursor alt prot [2971aa] alpha 3 type VI collagen isoform 5 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 185 5 C cysteine 1.1 28 2 D aspartate 5.8 148 2 E glutamate 5.8 150 2 F phenylalanine 4.6 117 2 G glycine 9.8 252 2 H histidine 1.1 29 1 I isoleucine 4.7 120 2 K lysine 5.4 139 3 L leucine 8.2 212 2 M methionine 1.2 30 1 N asparagine 3.8 98 2 P proline 7.3 187 4 Q glutamine 4.5 115 4 R arginine 6.6 170 2 S serine 6.6 169 3 T threonine 5.2 133 4 V valine 9.1 235 3 W tryptophan 0.2 5 1 Y tyrosine 1.9 48 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 3 type VI collagen isoform 4 precursor COL6A3 0.943 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.943 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.249 alpha 3 type VI collagen isoform 2 precursor COL6A3 0.249 alpha 3 type VI collagen isoform 3 precursor COL6A6 0.215 collagen type VI alpha 6 COL29A1 0.191 collagen, type XXIX, alpha 1 COL22A1 0.061 collagen, type XXII, alpha 1 COL6A1 0.061 collagen, type VI, alpha 1 precursor COL6A2 0.059 alpha 2 type VI collagen isoform 2C2 precursor [Hom... COL6A2 0.057 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.057 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL1A1 0.056 alpha 1 type I collagen preproprotein COL28A1 0.054 collagen, type XXVIII precursor COL5A1 0.054 alpha 1 type V collagen preproprotein COL27A1 0.053 collagen, type XXVII, alpha 1 COL2A1 0.053 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.053 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A1 0.052 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.052 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.052 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A2 0.051 alpha 2 type V collagen preproprotein COL3A1 0.051 collagen type III alpha 1 preproprotein COL5A3 0.051 collagen, type V, alpha 3 preproprotein COL11A2 0.051 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.051 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.051 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL1A2 0.050 alpha 2 type I collagen COL7A1 0.050 alpha 1 type VII collagen precursor COL16A1 0.049 alpha 1 type XVI collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.