COL6A3 23571

Name: COL6A3	Sequence: fasta or formatted (1036aa)		NCBI GI: 240255542
Description: alpha 3 type VI collagen isoform 2 precursor		Referenced in: Collagen
Other entries for this name: alt prot [2570aa] alpha 3 type VI collagen isoform 4 precursor alt prot [1237aa] alpha 3 type VI collagen isoform 3 precursor alt prot [3177aa] alpha 3 type VI collagen isoform 1 precursor alt prot [2971aa] alpha 3 type VI collagen isoform 5 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.7 80 2 C cysteine 0.2 2 1 D aspartate 5.5 57 2 E glutamate 5.6 58 2 F phenylalanine 5.1 53 1 G glycine 7.3 76 2 H histidine 1.2 12 1 I isoleucine 5.8 60 2 K lysine 4.1 42 1 L leucine 11.6 120 5 M methionine 1.0 10 1 N asparagine 4.0 41 2 P proline 5.6 58 3 Q glutamine 5.8 60 4 R arginine 5.6 58 1 S serine 7.6 79 2 T threonine 4.5 47 2 V valine 9.6 99 3 W tryptophan 0.0 0 0 Y tyrosine 2.3 24 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 3 type VI collagen isoform 2 precursor COL6A3 0.969 alpha 3 type VI collagen isoform 3 precursor COL6A3 0.955 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.955 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.642 alpha 3 type VI collagen isoform 4 precursor COL6A6 0.171 collagen type VI alpha 6 COL29A1 0.156 collagen, type XXIX, alpha 1 VWF 0.074 von Willebrand factor preproprotein VIT 0.066 vitrin MATN4 0.060 matrilin 4 isoform 3 precursor MATN1 0.058 matrilin 1, cartilage matrix protein COCH 0.057 cochlin precursor COCH 0.057 cochlin precursor COL12A1 0.054 collagen, type XII, alpha 1 long isoform precursor [... COL22A1 0.053 collagen, type XXII, alpha 1 COL14A1 0.053 collagen, type XIV, alpha 1 COL12A1 0.048 collagen, type XII, alpha 1 short isoform precursor ... COL20A1 0.044 collagen, type XX, alpha 1 VWA2 0.043 von Willebrand factor A domain containing 2 MATN2 0.042 matrilin 2 isoform b precursor MATN2 0.042 matrilin 2 isoform a precursor COL7A1 0.038 alpha 1 type VII collagen precursor MATN4 0.036 matrilin 4 isoform 2 precursor MATN4 0.036 matrilin 4 isoform 1 precursor COL21A1 0.034 collagen, type XXI, alpha 1 precursor MATN3 0.032 matrilin 3 precursor VWA1 0.026 von Willebrand factor A domain containing 1 isoform ... ITGA1 0.025 integrin, alpha 1 precursor COL6A1 0.024 collagen, type VI, alpha 1 precursor ITGA10 0.022 integrin, alpha 10 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.