COL28A1 5660

Name: COL28A1	Sequence: fasta or formatted (1125aa)		NCBI GI: 154759255
Description: collagen, type XXVIII precursor		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.7 42 2 C cysteine 1.3 15 1 D aspartate 5.6 63 2 E glutamate 6.5 73 2 F phenylalanine 3.4 38 2 G glycine 18.8 211 2 H histidine 0.6 7 1 I isoleucine 5.4 61 2 K lysine 8.1 91 2 L leucine 5.9 66 4 M methionine 1.2 14 1 N asparagine 2.4 27 1 P proline 11.5 129 2 Q glutamine 5.2 58 2 R arginine 3.6 40 1 S serine 6.1 69 3 T threonine 4.0 45 3 V valine 4.7 53 2 W tryptophan 0.4 5 1 Y tyrosine 1.6 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XXVIII precursor COL5A1 0.189 alpha 1 type V collagen preproprotein COL5A3 0.188 collagen, type V, alpha 3 preproprotein COL3A1 0.187 collagen type III alpha 1 preproprotein COL7A1 0.184 alpha 1 type VII collagen precursor COL1A1 0.182 alpha 1 type I collagen preproprotein COL4A5 0.182 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.182 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.182 type IV collagen alpha 5 isoform 3 precursor COL2A1 0.181 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.181 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A2 0.181 alpha 2 type V collagen preproprotein COL11A1 0.180 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.180 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.180 alpha 1 type XI collagen isoform A preproprotein [Ho... COL11A2 0.179 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.179 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.179 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL4A4 0.177 alpha 4 type IV collagen precursor LOC100293055 0.176 PREDICTED: similar to COL22A1 protein COL24A1 0.176 collagen, type XXIV, alpha 1 COL4A3 0.175 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.175 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.175 alpha 3 type IV collagen isoform 1 precursor COL4A1 0.175 alpha 1 type IV collagen preproprotein COL16A1 0.175 alpha 1 type XVI collagen precursor COL27A1 0.173 collagen, type XXVII, alpha 1 COL1A2 0.172 alpha 2 type I collagen COL4A3 0.171 alpha 3 type IV collagen isoform 5 precursor COL19A1 0.170 alpha 1 type XIX collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.