Guide to the Human Genome
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Name: COL6A2 Sequence: fasta or formatted (918aa) NCBI GI: 115527066
Description:

alpha 2 type VI collagen isoform 2C2a precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [1019aa] alpha 2 type VI collagen isoform 2C2 precursor
alt prot [828aa] alpha 2 type VI collagen isoform 2C2a' precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         52           2
 C cysteine            2.2         20           2
 D aspartate           7.0         64           3
 E glutamate           6.9         63           2
 F phenylalanine       3.5         32           1
 G glycine            15.9        146           2
 H histidine           1.3         12           1
 I isoleucine          4.4         40           2
 K lysine              5.7         52           1
 L leucine             6.0         55           3
 M methionine          1.3         12           1
 N asparagine          2.6         24           3
 P proline             9.9         91           2
 Q glutamine           4.4         40           3
 R arginine            6.1         56           2
 S serine              4.6         42           2
 T threonine           4.9         45           2
 V valine              5.2         48           2
 W tryptophan          0.7          6           1
 Y tyrosine            2.0         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 2 type VI collagen isoform 2C2a precursor [Ho... 
COL6A2                0.896   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
COL6A2                0.895   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A1                0.274   collagen, type VI, alpha 1 precursor 
COL28A1               0.176   collagen, type XXVIII precursor 
COL5A1                0.164   alpha 1 type V collagen preproprotein 
COL1A1                0.157   alpha 1 type I collagen preproprotein 
COL11A2               0.157   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.157   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.157   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL2A1                0.156   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.156   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A1               0.155   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.155   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.155   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL7A1                0.154   alpha 1 type VII collagen precursor 
COL6A3                0.154   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.154   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.154   alpha 3 type VI collagen isoform 4 precursor 
COL3A1                0.154   collagen type III alpha 1 preproprotein 
COL9A1                0.151   alpha 1 type IX collagen isoform 1 precursor 
COL5A3                0.150   collagen, type V, alpha 3 preproprotein 
COL5A2                0.149   alpha 2 type V collagen preproprotein 
COL9A1                0.149   alpha 1 type IX collagen isoform 2 precursor 
COL10A1               0.146   type X collagen alpha 1 precursor 
COL29A1               0.146   collagen, type XXIX, alpha 1 
COL16A1               0.145   alpha 1 type XVI collagen precursor 
COL4A5                0.145   type IV collagen alpha 5 isoform 1 precursor 
COL27A1               0.145   collagen, type XXVII, alpha 1 
LOC100293055          0.145   PREDICTED: similar to COL22A1 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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