COL6A3 23570

Name: COL6A3	Sequence: fasta or formatted (1237aa)		NCBI GI: 240255540
Description: alpha 3 type VI collagen isoform 3 precursor		Referenced in: Collagen
Other entries for this name: alt prot [2570aa] alpha 3 type VI collagen isoform 4 precursor alt prot [1036aa] alpha 3 type VI collagen isoform 2 precursor alt prot [3177aa] alpha 3 type VI collagen isoform 1 precursor alt prot [2971aa] alpha 3 type VI collagen isoform 5 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 99 2 C cysteine 0.2 2 1 D aspartate 5.5 68 2 E glutamate 5.5 68 2 F phenylalanine 5.3 66 1 G glycine 7.6 94 2 H histidine 1.2 15 1 I isoleucine 5.9 73 2 K lysine 3.9 48 1 L leucine 11.5 142 5 M methionine 0.9 11 1 N asparagine 3.9 48 2 P proline 5.3 66 3 Q glutamine 5.8 72 4 R arginine 5.3 66 1 S serine 7.5 93 2 T threonine 4.6 57 2 V valine 9.9 122 3 W tryptophan 0.0 0 0 Y tyrosine 2.2 27 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 3 type VI collagen isoform 3 precursor COL6A3 0.989 alpha 3 type VI collagen isoform 5 precursor COL6A3 0.963 alpha 3 type VI collagen isoform 1 precursor COL6A3 0.811 alpha 3 type VI collagen isoform 2 precursor COL6A3 0.538 alpha 3 type VI collagen isoform 4 precursor COL6A6 0.174 collagen type VI alpha 6 COL29A1 0.156 collagen, type XXIX, alpha 1 VWF 0.063 von Willebrand factor preproprotein VIT 0.055 vitrin MATN1 0.050 matrilin 1, cartilage matrix protein COCH 0.049 cochlin precursor COCH 0.049 cochlin precursor MATN4 0.045 matrilin 4 isoform 3 precursor COL12A1 0.045 collagen, type XII, alpha 1 long isoform precursor [... COL22A1 0.044 collagen, type XXII, alpha 1 COL14A1 0.044 collagen, type XIV, alpha 1 COL12A1 0.040 collagen, type XII, alpha 1 short isoform precursor ... COL20A1 0.037 collagen, type XX, alpha 1 VWA2 0.036 von Willebrand factor A domain containing 2 MATN2 0.035 matrilin 2 isoform b precursor MATN2 0.035 matrilin 2 isoform a precursor COL7A1 0.031 alpha 1 type VII collagen precursor MATN4 0.030 matrilin 4 isoform 2 precursor MATN4 0.030 matrilin 4 isoform 1 precursor COL21A1 0.029 collagen, type XXI, alpha 1 precursor MATN3 0.027 matrilin 3 precursor VWA1 0.022 von Willebrand factor A domain containing 1 isoform ... ITGA1 0.021 integrin, alpha 1 precursor COL6A1 0.020 collagen, type VI, alpha 1 precursor ITGA10 0.019 integrin, alpha 10 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.